BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0202800 Os05g0202800|J065159M07
         (99 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0202800  Conserved hypothetical protein                      141   9e-35
AF009959                                                           71   1e-13
Os01g0200700  Similar to Metallothionein-like protein type 3...    65   1e-11

>Os05g0202800 Conserved hypothetical protein
          Length = 99

 Score =  141 bits (356), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 72/99 (72%), Positives = 72/99 (72%)

Query: 1  MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKRATSRWLXXXXXXXXXXXXXXXXXXXXX 60
          MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKRATSRWL                     
Sbjct: 1  MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKRATSRWLRRSATRRTTASASAPPAAPAP 60

Query: 61 XXXXXXDEQSYPLQPGPTIQCVIRYAPMRAYICICMHAC 99
                DEQSYPLQPGPTIQCVIRYAPMRAYICICMHAC
Sbjct: 61 AATAASDEQSYPLQPGPTIQCVIRYAPMRAYICICMHAC 99



>AF009959 
          Length = 65

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/39 (89%), Positives = 37/39 (94%), Gaps = 1/39 (2%)

Query: 1  MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKRATSRWL 39
          MSDKCGNCDCADKSQCVKKGTSYGVV+VDAEK  TS+WL
Sbjct: 1  MSDKCGNCDCADKSQCVKKGTSYGVVLVDAEK-TTSKWL 38



>Os01g0200700 Similar to Metallothionein-like protein type 3 (MT-3) (MWMT3)
          Length = 62

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/32 (96%), Positives = 32/32 (100%)

Query: 1  MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEK 32
          MSDKCGNCDCADKSQCVKKGTSYGVVIV+AEK
Sbjct: 1  MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEK 32



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.136    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,569,118
Number of extensions: 53853
Number of successful extensions: 132
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 4
Length of query: 99
Length of database: 17,035,801
Length adjustment: 68
Effective length of query: 31
Effective length of database: 13,485,249
Effective search space: 418042719
Effective search space used: 418042719
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)