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Os05g0202800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.1 (0.0988) R2 : 0.806
β1 : 13 (0.384) R2dD : 0.594 R2D : 0.59
β2 : 1.64 (0.229) R2dC : 0.02 R2C : -0.0121
β3 : -2.34 (0.261) R2dE : 0.0517 R2E : 0.177
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 2.73 (0.234) R2dN8 : 0.102 R2N8 : 0.0509
σ : 1.79
deviance : 1469.22
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C
peak time of C : 12.5
E
wheather : temperature
threshold : 21
memory length : 5262
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.68
open length of G : 0.466

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1443.38 1.79 13.2 11.4 1.55 -2.31 -2.62 4 2.45 12.8 19.94 4037 3.93 0.913
1469.1 1.79 13.2 12.7 1.55 -2.44 -2.46 -- 2.51 12.8 21.1 6679 4.7 0.434
1454.89 1.78 13.2 11.4 1.35 -2.13 -- 3.91 2.35 12.7 20.8 4370 3.98 1.13
1469.22 1.79 13.1 13 1.64 -2.34 -- -- 2.73 12.5 21 5262 4.68 0.466
1558.51 1.84 13.2 11.3 -- -2.18 -- 3.9 2.39 -- 20.8 4366 4.22 1.17
1713.67 1.94 12.7 14.3 1.26 -- -1.81 -- 3.85 12.3 -- -- -- --
1727.77 1.95 12.8 14.3 1.27 -- -- -- 3.85 12.4 -- -- -- --
1588.44 1.86 13 12.8 -- -2.19 -- -- 2.81 -- 21 5790 4.78 0.829
3543.88 2.77 13 -- 1.44 -6.46 -- -- 3.74 14.9 18.09 47520 2.28 0.291
1829.1 2 12.8 14.2 -- -- -- -- 3.83 -- -- -- -- --
7101.84 3.94 13.1 -- 1.08 -- -- -- 2.26 11.8 -- -- -- --
1990.15 2.08 13.7 -- -- -11 -- -- -0.365 -- 19.1 47520 6.83 0.385
7175.01 3.95 13.1 -- -- -- -- -- 2.25 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1376.84 wind 1 43200 < th dose dependent rect. 17 11
3 1380.92 wind 1 43200 < th dose independent rect. 20 7
5 1381.96 wind 1 43200 < th dose dependent rect. 22 1
6 1382.55 wind 1 43200 < th dose independent rect. 18 9
8 1383.70 wind 1 43200 > th dose independent rect. 18 9
9 1384.93 wind 1 43200 > th dose independent rect. 20 7
11 1387.65 wind 1 43200 < th dose independent rect. 17 11
16 1389.98 radiation 10 43200 < th dose dependent rect. 18 15
18 1391.02 wind 1 43200 < th dose dependent rect. 22 5
24 1394.93 wind 1 43200 > th dose independent rect. 22 5
25 1396.24 radiation 10 43200 < th dose dependent rect. 6 1
26 1396.30 wind 1 43200 < th dose independent rect. 22 2
27 1396.39 wind 1 43200 < th dose dependent rect. 20 7
28 1397.63 radiation 10 43200 < th dose dependent rect. 21 11
29 1397.67 radiation 10 43200 < th dose dependent rect. 24 8
35 1397.77 radiation 10 43200 < th dose dependent rect. 4 4
41 1398.68 radiation 40 43200 > th dose dependent rect. 14 1
44 1399.11 radiation 10 43200 < th dose dependent sin 10 NA
59 1399.64 radiation 40 43200 > th dose dependent rect. 14 19
136 1406.84 wind 1 43200 > th dose independent rect. 22 2
168 1411.48 wind 1 43200 < th dose dependent sin 14 NA
183 1412.84 wind 1 43200 < th dose independent rect. 20 4
191 1414.06 wind 1 43200 > th dose independent rect. 20 3
192 1414.47 wind 1 43200 < th dose dependent rect. 20 4
193 1414.55 radiation 10 43200 > th dose dependent rect. 17 1
230 1416.39 radiation 30 43200 < th dose independent rect. 14 4
231 1416.40 radiation 30 43200 < th dose independent rect. 14 13
235 1416.43 radiation 30 43200 < th dose independent rect. 14 16
239 1416.48 radiation 30 43200 < th dose independent rect. 14 8
248 1417.26 wind 7 43200 > th dose dependent rect. 13 2
320 1419.49 radiation 40 43200 < th dose dependent rect. 15 17
354 1420.36 wind 9 43200 < th dose independent rect. 14 2
359 1420.55 wind 7 43200 > th dose dependent rect. 11 4
372 1421.31 wind 7 43200 > th dose independent rect. 13 1
488 1424.37 radiation 1 14400 < th dose independent rect. 9 3
500 1425.46 radiation 30 43200 > th dose independent rect. 16 16
501 1425.48 radiation 1 14400 > th dose independent rect. 9 3
593 1427.69 wind 9 43200 < th dose independent rect. 11 1
609 1428.09 radiation 40 43200 < th dose dependent sin 13 NA
623 1428.40 radiation 20 43200 < th dose dependent rect. 17 1
646 1428.66 radiation 40 43200 < th dose dependent rect. 21 9
658 1428.92 radiation 40 43200 < th dose dependent rect. 24 6
671 1429.28 wind 9 43200 > th dose independent rect. 11 1
679 1429.42 radiation 30 43200 > th dose dependent sin 13 NA
683 1429.55 radiation 1 43200 > th dose dependent sin 13 NA
737 1430.19 radiation 30 43200 > th dose independent rect. 7 1
769 1430.71 radiation 40 43200 < th dose dependent rect. 15 3
771 1430.82 radiation 40 43200 < th dose dependent rect. 15 12
781 1430.99 radiation 40 43200 < th dose dependent rect. 15 7
848 1432.37 radiation 30 43200 < th dose independent sin 14 NA
972 1434.84 radiation 40 43200 > th dose independent rect. 15 18
987 1435.22 wind 9 43200 > th dose dependent rect. 11 1