BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0188600 Os05g0188600|AK111527
         (672 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0188600  Homeodomain-like containing protein                1286   0.0  

>Os05g0188600 Homeodomain-like containing protein
          Length = 672

 Score = 1286 bits (3329), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 629/672 (93%), Positives = 629/672 (93%)

Query: 1   MSRLKAKILSILLQLCEAETVSYLDEVATSPKSMQLGQTLALEVLDLLKTAFGRKQKLTL 60
           MSRLKAKILSILLQLCEAETVSYLDEVATSPKSMQLGQTLALEVLDLLKTAFGRKQKLTL
Sbjct: 1   MSRLKAKILSILLQLCEAETVSYLDEVATSPKSMQLGQTLALEVLDLLKTAFGRKQKLTL 60

Query: 61  DSHDKSYPMGSVLISALRLVDVFSDDSNFRSSFITNTIPFLTQILAIPHDEFVSNWCSVN 120
           DSHDKSYPMGSVLISALRLVDVFSDDSNFRSSFITNTIPFLTQILAIPHDEFVSNWCSVN
Sbjct: 61  DSHDKSYPMGSVLISALRLVDVFSDDSNFRSSFITNTIPFLTQILAIPHDEFVSNWCSVN 120

Query: 121 LPVIEEDANLDYDPFGXXXXXXXXXGNKLTEAKANYSCPFRPISMPSIAYAQTRTSCVVK 180
           LPVIEEDANLDYDPFG         GNKLTEAKANYSCPFRPISMPSIAYAQTRTSCVVK
Sbjct: 121 LPVIEEDANLDYDPFGAAELALAAAGNKLTEAKANYSCPFRPISMPSIAYAQTRTSCVVK 180

Query: 181 IIANLHVFVPNICEEQERDLFLQKFQKYLVSGNPRSSVDHPASADLKATTVCRNLGSLSE 240
           IIANLHVFVPNICEEQERDLFLQKFQKYLVSGNPRSSVDHPASADLKATTVCRNLGSLSE
Sbjct: 181 IIANLHVFVPNICEEQERDLFLQKFQKYLVSGNPRSSVDHPASADLKATTVCRNLGSLSE 240

Query: 241 YARSLIPNNLLNEEDVQLLSEFAYKLQTWCKSHVGQSTSQAVKIDPSSESKEDFKPLQHP 300
           YARSLIPNNLLNEEDVQLLSEFAYKLQTWCKSHVGQSTSQAVKIDPSSESKEDFKPLQHP
Sbjct: 241 YARSLIPNNLLNEEDVQLLSEFAYKLQTWCKSHVGQSTSQAVKIDPSSESKEDFKPLQHP 300

Query: 301 LIPSTVVPDSSINNLPKXXXXXXXXXXXXXXXXXSTKQEGNARDETPRSTVALNGGFLQN 360
           LIPSTVVPDSSINNLPK                 STKQEGNARDETPRSTVALNGGFLQN
Sbjct: 301 LIPSTVVPDSSINNLPKNMEEPTPTNMEEPAPTPSTKQEGNARDETPRSTVALNGGFLQN 360

Query: 361 SVGQDLVHLGVARXXXXXXXXXXXXXXXXXRCKMDLDPASSSMDHFKTPDRKESGLQDDE 420
           SVGQDLVHLGVAR                 RCKMDLDPASSSMDHFKTPDRKESGLQDDE
Sbjct: 361 SVGQDLVHLGVARTSSGFLGGGTSTSTGSLRCKMDLDPASSSMDHFKTPDRKESGLQDDE 420

Query: 421 KGDTHMYDERQPKRRKRTIMNDRQINEIEKALIDEPEMHKNAALLQAWSEKLSGQGSEIT 480
           KGDTHMYDERQPKRRKRTIMNDRQINEIEKALIDEPEMHKNAALLQAWSEKLSGQGSEIT
Sbjct: 421 KGDTHMYDERQPKRRKRTIMNDRQINEIEKALIDEPEMHKNAALLQAWSEKLSGQGSEIT 480

Query: 481 SSQLKNWLNNRKAKLARIAKERGVLSEGENADKPSTPATPHHCDSSESAGEESYLPPARV 540
           SSQLKNWLNNRKAKLARIAKERGVLSEGENADKPSTPATPHHCDSSESAGEESYLPPARV
Sbjct: 481 SSQLKNWLNNRKAKLARIAKERGVLSEGENADKPSTPATPHHCDSSESAGEESYLPPARV 540

Query: 541 MSALGISKGSRFVSPDGNETTSQAEFNQNIMLSRPFTRSFSFEPGRLVSLIDNDGKEVGR 600
           MSALGISKGSRFVSPDGNETTSQAEFNQNIMLSRPFTRSFSFEPGRLVSLIDNDGKEVGR
Sbjct: 541 MSALGISKGSRFVSPDGNETTSQAEFNQNIMLSRPFTRSFSFEPGRLVSLIDNDGKEVGR 600

Query: 601 GKIFQVEGRLQGKALTDTRVCIVDVIELKIEKWRELPHPSEASGRTFQEAESRNGGVMRV 660
           GKIFQVEGRLQGKALTDTRVCIVDVIELKIEKWRELPHPSEASGRTFQEAESRNGGVMRV
Sbjct: 601 GKIFQVEGRLQGKALTDTRVCIVDVIELKIEKWRELPHPSEASGRTFQEAESRNGGVMRV 660

Query: 661 AWDVIRLSPVVQ 672
           AWDVIRLSPVVQ
Sbjct: 661 AWDVIRLSPVVQ 672



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.130    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,175,110
Number of extensions: 842640
Number of successful extensions: 1742
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1740
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 565
Effective length of database: 11,448,903
Effective search space: 6468630195
Effective search space used: 6468630195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 159 (65.9 bits)