Os05g0188600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os05g0188600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9.75 | 0.147 | 9.86 | 0.273 | 0.42 | -0.37 | -0.0512 | 0.0761 | 0.267 | 1.9 | 79.99 | 1385 | -- | -- |
| 9.76 | 0.145 | 9.86 | 0.267 | 0.423 | -0.365 | -0.0513 | -- | 0.266 | 1.9 | 79.94 | 1377 | -- | -- |
| 9.76 | 0.146 | 9.86 | 0.274 | 0.421 | -0.371 | -- | 0.0722 | 0.267 | 1.9 | 79.97 | 1379 | -- | -- |
| 9.77 | 0.146 | 9.86 | 0.268 | 0.422 | -0.367 | -- | -- | 0.266 | 1.9 | 80 | 1379 | -- | -- |
| 13.46 | 0.172 | 9.86 | 0.283 | -- | -0.264 | -- | 0.017 | 0.258 | -- | 79.97 | 1379 | -- | -- |
| 11.4 | 0.158 | 9.87 | 0.254 | 0.405 | -- | -0.0918 | -- | 0.244 | 1.8 | -- | -- | -- | -- |
| 11.43 | 0.158 | 9.87 | 0.257 | 0.405 | -- | -- | -- | 0.244 | 1.81 | -- | -- | -- | -- |
| 13.46 | 0.172 | 9.86 | 0.282 | -- | -0.264 | -- | -- | 0.258 | -- | 80 | 1722 | -- | -- |
| 11.67 | 0.159 | 9.87 | -- | 0.417 | -0.349 | -- | -- | 0.242 | 1.95 | 80 | 1386 | -- | -- |
| 21.37 | 0.216 | 9.86 | 0.274 | -- | -- | -- | -- | 0.254 | -- | -- | -- | -- | -- |
| 13.17 | 0.17 | 9.87 | -- | 0.41 | -- | -- | -- | 0.216 | 1.82 | -- | -- | -- | -- |
| 15.31 | 0.183 | 9.87 | -- | -- | -0.266 | -- | -- | 0.22 | -- | 83 | 1710 | -- | -- |
| 23.34 | 0.225 | 9.87 | -- | -- | -- | -- | -- | 0.223 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 9.11 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 2 | 9.12 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 3 | 9.17 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 6 | 9.27 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 10 |
| 13 | 9.36 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 19 | 9.38 | humidity | 80.0 | 1440 | < th | dose independent | sin | 1 | NA |
| 39 | 9.42 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 47 | 9.43 | humidity | 80.0 | 1440 | > th | dose independent | sin | 1 | NA |
| 71 | 9.45 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 2 | 14 |
| 77 | 9.45 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 85 | 9.46 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 2 | 16 |
| 121 | 9.50 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 207 | 9.59 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 223 | 9.62 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 240 | 9.63 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 244 | 9.64 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 245 | 9.64 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 259 | 9.65 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 261 | 9.65 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 272 | 9.65 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 19 | 21 |
| 278 | 9.66 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 287 | 9.67 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 11 | 5 |
| 290 | 9.67 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 311 | 9.68 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 5 |
| 317 | 9.69 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 5 |
| 334 | 9.69 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 5 |
| 343 | 9.69 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 12 |
| 348 | 9.69 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 355 | 9.70 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 23 | NA |
| 356 | 9.70 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 2 | 2 |
| 544 | 9.75 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 11 |
| 556 | 9.75 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 7 |
| 557 | 9.75 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 2 | 8 |
| 634 | 9.77 | humidity | 80.0 | 1440 | < th | dose independent | no | NA | NA |
| 653 | 9.77 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 673 | 9.77 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 2 | 14 |
| 693 | 9.78 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 697 | 9.78 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 23 | NA |
| 716 | 9.78 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 774 | 9.79 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 5 | 11 |
| 817 | 9.79 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 2 | 19 |
| 840 | 9.80 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 842 | 9.80 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 845 | 9.80 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 18 | NA |
| 909 | 9.80 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 19 | 21 |
| 911 | 9.80 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 912 | 9.80 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 19 | 21 |
| 923 | 9.81 | radiation | 10.0 | 1440 | > th | dose independent | sin | 21 | NA |
| 964 | 9.81 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 8 | 23 |