BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0179800 Os05g0179800|AK101047
         (311 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0179800  Conserved hypothetical protein                      191   7e-49
Os01g0179300  Conserved hypothetical protein                       69   4e-12

>Os05g0179800 Conserved hypothetical protein
          Length = 311

 Score =  191 bits (485), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 126/293 (43%), Positives = 126/293 (43%)

Query: 19  IGTSNVFAALDTLXXXXXXXXXXXXXXXXXXXVLWAPAPLTTRSWADVEXXXXXXYFATT 78
           IGTSNVFAALDTL                   VLWAPAPLTTRSWADVE      YFATT
Sbjct: 19  IGTSNVFAALDTLKRRKKPSSSSKKHAEKEKEVLWAPAPLTTRSWADVEDDDDDDYFATT 78

Query: 79  APPRPVWGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 138
           APPRPVWGT                                                   
Sbjct: 79  APPRPVWGTHHHAADAHDDDHDEQAALEQELESEDEEVDDDAEDEHEHETEDATPAEPAM 138

Query: 139 XXXXXXXXXXKDTERQLSXXXXXXXXXXXXXXXXXXXXXSSKSNNDAQNETNGKKGAEQA 198
                     KDTERQLS                     SSKSNNDAQNETNGKKGAEQA
Sbjct: 139 NKAAAPPAPPKDTERQLSKKELKKKELEELDAILAELELSSKSNNDAQNETNGKKGAEQA 198

Query: 199 ADGENKEGAPAPXXXXXXXXXXXXXXXXXXXXXXTQELNGGVEEAAGAEPDEEVASMDVK 258
           ADGENKEGAPAP                      TQELNGGVEEAAGAEPDEEVASMDVK
Sbjct: 199 ADGENKEGAPAPAESKSSKKKKAKKDKSAKEAKETQELNGGVEEAAGAEPDEEVASMDVK 258

Query: 259 DRIXXXXXXXXXXXXXEMDTXXXXXXXXXXXXXXXXXXXXXXXXXHYNQQPVR 311
           DRI             EMDT                         HYNQQPVR
Sbjct: 259 DRIKKVASMKKKKSSKEMDTAAKIAASEAAARSAKLAAAKKKEKSHYNQQPVR 311



>Os01g0179300 Conserved hypothetical protein
          Length = 331

 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 29/37 (78%), Positives = 30/37 (81%)

Query: 51  VLWAPAPLTTRSWADVEXXXXXXYFATTAPPRPVWGT 87
           V WAPAPLTT+SWADVE      YFATTAPPRPVWGT
Sbjct: 69  VFWAPAPLTTKSWADVEDDDDDDYFATTAPPRPVWGT 105



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.305    0.123    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,408,328
Number of extensions: 96539
Number of successful extensions: 166
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 3
Length of query: 311
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 210
Effective length of database: 11,762,187
Effective search space: 2470059270
Effective search space used: 2470059270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 156 (64.7 bits)