Os05g0179800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0179800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.28 | 0.306 | 11.3 | 0.513 | 0.776 | 0.421 | 0.0321 | -0.722 | 0.315 | 19.2 | 18.97 | 1603 | -- | -- |
| 43.33 | 0.307 | 11.3 | 0.501 | 0.788 | 0.407 | 0.00464 | -- | 0.306 | 19.3 | 18.98 | 1601 | -- | -- |
| 42.28 | 0.303 | 11.3 | 0.511 | 0.776 | 0.421 | -- | -0.73 | 0.315 | 19.2 | 18.98 | 1609 | -- | -- |
| 43.33 | 0.307 | 11.3 | 0.501 | 0.788 | 0.407 | -- | -- | 0.306 | 19.2 | 18.98 | 1603 | -- | -- |
| 72.79 | 0.4 | 11.3 | 0.389 | -- | 0.269 | -- | -0.576 | 0.185 | -- | 19 | 1523 | -- | -- |
| 48.74 | 0.327 | 11.3 | 0.432 | 0.768 | -- | -3.11e-05 | -- | 0.211 | 19.4 | -- | -- | -- | -- |
| 48.74 | 0.327 | 11.3 | 0.432 | 0.768 | -- | -- | -- | 0.211 | 19.4 | -- | -- | -- | -- |
| 74.58 | 0.402 | 11.3 | 0.447 | -- | 0.397 | -- | -- | 0.306 | -- | 18.15 | 1528 | -- | -- |
| 47.53 | 0.321 | 11.3 | -- | 0.783 | 0.399 | -- | -- | 0.3 | 19.3 | 19.99 | 26180 | -- | -- |
| 80.2 | 0.418 | 11.3 | 0.42 | -- | -- | -- | -- | 0.199 | -- | -- | -- | -- | -- |
| 53.66 | 0.343 | 11.4 | -- | 0.764 | -- | -- | -- | 0.163 | 19.5 | -- | -- | -- | -- |
| 79.08 | 0.414 | 11.3 | -- | -- | 0.398 | -- | -- | 0.3 | -- | 19.87 | 26096 | -- | -- |
| 84.85 | 0.43 | 11.3 | -- | -- | -- | -- | -- | 0.152 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.99 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 7 |
| 6 | 39.26 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 7 |
| 26 | 39.79 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 2 |
| 29 | 39.82 | temperature | 20 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 37 | 39.95 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 6 |
| 42 | 40.00 | temperature | 25 | 270 | < th | dose dependent | rect. | 6 | 4 |
| 54 | 40.08 | temperature | 15 | 720 | > th | dose dependent | rect. | 24 | 7 |
| 59 | 40.16 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 65 | 40.20 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 2 |
| 182 | 41.07 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 4 |
| 186 | 41.08 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 215 | 41.20 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 294 | 41.55 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 18 |
| 319 | 41.67 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 353 | 41.79 | humidity | 70 | 1440 | > th | dose independent | rect. | 24 | 13 |
| 356 | 41.80 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 7 |
| 431 | 42.00 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 438 | 42.01 | humidity | 70 | 1440 | < th | dose independent | rect. | 19 | 19 |
| 439 | 42.01 | temperature | 25 | 720 | < th | dose dependent | sin | 7 | NA |
| 494 | 42.16 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 504 | 42.19 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 513 | 42.21 | humidity | 70 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 526 | 42.22 | humidity | 70 | 1440 | > th | dose independent | sin | 7 | NA |
| 584 | 42.36 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 10 |
| 629 | 42.49 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 10 |
| 633 | 42.51 | humidity | 70 | 1440 | < th | dose independent | sin | 7 | NA |
| 639 | 42.52 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 684 | 42.59 | radiation | 40 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 707 | 42.63 | humidity | 80 | 1440 | < th | dose dependent | rect. | 20 | 18 |
| 711 | 42.65 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 715 | 42.65 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 9 | 14 |
| 722 | 42.67 | radiation | 10 | 1440 | < th | dose dependent | sin | 23 | NA |
| 738 | 42.70 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 24 | 23 |
| 751 | 42.72 | radiation | 20 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 839 | 42.81 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 4 |
| 856 | 42.82 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 874 | 42.84 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 876 | 42.84 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 892 | 42.85 | humidity | 80 | 1440 | < th | dose dependent | sin | 7 | NA |
| 942 | 42.87 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 949 | 42.88 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 7 | 16 |
| 958 | 42.89 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 23 |