BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0168200 Os05g0168200|AK061420
         (256 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0168200  Conserved hypothetical protein                      218   3e-57
Os07g0459600                                                      167   6e-42

>Os05g0168200 Conserved hypothetical protein
          Length = 256

 Score =  218 bits (555), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 123/241 (51%), Positives = 123/241 (51%)

Query: 16  ADDSANSVQNIRLVIDIGDRTIQVPLNGHTVAQNIGRQXXXXXXXXXXXXXXXXXXXXXX 75
           ADDSANSVQNIRLVIDIGDRTIQVPLNGHTVAQNIGRQ                      
Sbjct: 16  ADDSANSVQNIRLVIDIGDRTIQVPLNGHTVAQNIGRQAAAAVAGDSSAGGVSEKAGGGG 75

Query: 76  XXWLQEQDGLLSMRGWLXXXXXXXXXXXXXXXXXPPGWMPRPRDWFXXXXXXXXXXXXVT 135
             WLQEQDGLLSMRGWL                 PPGWMPRPRDWF            VT
Sbjct: 76  EEWLQEQDGLLSMRGWLMAVATLFAAMAFQAALQPPGWMPRPRDWFAALLAADPAAAAVT 135

Query: 136 RDQAGKAMLYLIVNTCTFATSXXXXXXXXXXXXXXXXXXXCASRRVTARLIXXXXXXXXX 195
           RDQAGKAMLYLIVNTCTFATS                   CASRRVTARLI         
Sbjct: 136 RDQAGKAMLYLIVNTCTFATSLAVLLMLLAVGDAGGGGGGCASRRVTARLIANMMTAVAL 195

Query: 196 XXXXXXXXXXXDDYRLMXXXXXXXXXXXXXXXXXXRCNLALPFRRXXXXXXXXCCSWVSR 255
                      DDYRLM                  RCNLALPFRR        CCSWVSR
Sbjct: 196 FAAATFALCAADDYRLMAFVGTVVAVYAAVTVVFVRCNLALPFRRGGGGGGHGCCSWVSR 255

Query: 256 L 256
           L
Sbjct: 256 L 256



>Os07g0459600 
          Length = 428

 Score =  167 bits (424), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 100/198 (50%), Positives = 101/198 (51%), Gaps = 5/198 (2%)

Query: 16  ADDSANSVQNIRLVIDIGDRTIQVPLNGHTVAQNIGRQXXXXXXX-XXXXXXXXXXXXXX 74
           ADDSAN VQNIRLVIDIGDRTIQVPLNGHTV QNIGRQ                      
Sbjct: 38  ADDSANYVQNIRLVIDIGDRTIQVPLNGHTVVQNIGRQAAASVAGDSSSAGGVSEKAGGG 97

Query: 75  XXXWLQEQDGLLSMRGWLXXXXXXXXXXXXXXXXXPPGWMPRPRDWFXXXXXXXXXXXXV 134
              WLQEQDGLL MRGWL                 PP WMPRPRDWF            V
Sbjct: 98  GEEWLQEQDGLLCMRGWLMAAATLFAAMAFQAALQPPAWMPRPRDWFAALLAADPAAAAV 157

Query: 135 TRDQAGKAMLYLIVNTCTFATSXXXXXXXXXXXXXXXXXXXCASRRVTARLIXXXXXXXX 194
           TRDQAGKAMLYLIV+TCTFATS                   CASRRVTARLI        
Sbjct: 158 TRDQAGKAMLYLIVSTCTFATS----LAVLLMLLAVGGGGGCASRRVTARLISNMMTAVA 213

Query: 195 XXXXXXXXXXXXDDYRLM 212
                       DDYRLM
Sbjct: 214 LFAAATFALCVADDYRLM 231




 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 69/187 (36%), Gaps = 47/187 (25%)

Query: 28  LVIDIGDRTIQVPLNGHTVAQNIGRQXXXXXXXXXXXXXXXXXXXXXXXXWLQEQD--GL 85
           LVIDIGDRTIQVPLNGHTV QNIGRQ                        WLQ+Q   GL
Sbjct: 241 LVIDIGDRTIQVPLNGHTVVQNIGRQ--AAAAVAGGVSEKAGSAGGSGEEWLQQQGGFGL 298

Query: 86  LSMRGWLXXXXXXXXXXXXX-XXXXPPGWMPRPRDWFXXXXXXXXXXXXVTRDQAGKAML 144
           L MRGWL                    GWMPRPRDW                     A+L
Sbjct: 299 LCMRGWLDGGGGHAVRRHGVPGGATAAGWMPRPRDWL--------------------AVL 338

Query: 145 YLIVNTCTFATSXXXXXXXXXXXXXXXXXXXCASRRVTARLIXXXXXXXXXXXXXXXXXX 204
             + +  +                       CASRRVTARLI                  
Sbjct: 339 LAVGDGGS----------------------GCASRRVTARLITNMMTAVAQFAADTFALC 376

Query: 205 XXDDYRL 211
             DDYRL
Sbjct: 377 AADDYRL 383



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.138    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,736,464
Number of extensions: 75126
Number of successful extensions: 70
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 3
Length of query: 256
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 157
Effective length of database: 11,866,615
Effective search space: 1863058555
Effective search space used: 1863058555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 155 (64.3 bits)