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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0168200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.39 (0.0471) R2 : 0.591
β1 : 3.16 (0.179) R2dD : 0.323 R2D : 0.102
β2 : 1.65 (0.114) R2dC : 0.191 R2C : 0.205
β3 : -2.43 (0.161) R2dE : 0.251 R2E : 0.0502
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.753 (0.106) R2dN8 : 0.0696 R2N8 : -0.063
σ : 0.867
deviance : 346.31
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_____
C
peak time of C : 9.51
E
wheather : temperature
threshold : 19.76
memory length : 1304
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
335.93 0.861 4.4 3.05 1.68 -2.41 1.69 -0.168 0.734 9.43 19.78 1322 -- --
335.96 0.854 4.39 3.1 1.68 -2.41 1.7 -- 0.748 9.43 19.8 1321 -- --
346.22 0.867 4.4 3.06 1.66 -2.41 -- -0.356 0.735 9.41 19.72 1282 -- --
346.31 0.867 4.39 3.16 1.65 -2.43 -- -- 0.753 9.51 19.76 1304 -- --
469.65 1.01 4.43 3.26 -- -2.92 -- -0.411 0.824 -- 20.13 2252 -- --
505.52 1.05 4.51 2.23 1.8 -- 1.64 -- 0.195 9.99 -- -- -- --
515.88 1.06 4.51 2.3 1.79 -- -- -- 0.2 10.1 -- -- -- --
418.08 0.952 4.41 3.28 -- -3.4 -- -- 0.843 -- 19.5 849 -- --
574.07 1.12 4.51 -- 1.71 -1.53 -- -- 0.255 9.56 22.2 1256 -- --
709.77 1.24 4.56 2.27 -- -- -- -- 0.197 -- -- -- -- --
654.86 1.2 4.57 -- 1.78 -- -- -- -0.056 10 -- -- -- --
668.47 1.2 4.54 -- -- -2.42 -- -- 0.305 -- 21.7 829 -- --
845.99 1.36 4.62 -- -- -- -- -- -0.0549 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 324.54 temperature 10 720 > th dose dependent rect. 17 18
3 324.93 temperature 20 720 > th dose dependent rect. 17 17
27 335.44 temperature 20 1440 > th dose dependent sin 4 NA
29 335.56 temperature 20 1440 > th dose dependent rect. 2 10
31 335.70 temperature 20 1440 > th dose dependent rect. 1 13
43 336.08 temperature 20 1440 > th dose dependent rect. 24 17
54 336.41 temperature 20 1440 > th dose dependent rect. 24 20
85 336.81 temperature 20 1440 > th dose dependent rect. 18 23
113 337.10 temperature 20 1440 > th dose dependent rect. 7 22
128 337.21 temperature 20 1440 > th dose dependent no NA NA
196 337.96 temperature 20 1440 > th dose dependent rect. 11 23
203 338.07 temperature 10 1440 > th dose dependent rect. 4 8
250 338.72 temperature 10 1440 > th dose dependent rect. 2 12
281 338.95 temperature 20 720 > th dose dependent sin 11 NA
643 340.73 temperature 30 1440 < th dose dependent rect. 5 7
672 340.88 temperature 20 1440 > th dose dependent rect. 7 1
679 340.92 temperature 30 1440 < th dose dependent rect. 7 1
702 341.09 temperature 30 1440 < th dose dependent rect. 6 4
730 341.31 temperature 30 720 < th dose dependent rect. 18 15
739 341.37 temperature 10 720 > th dose dependent rect. 16 13
786 341.78 temperature 30 720 < th dose dependent rect. 15 17
860 342.49 temperature 30 720 < th dose dependent rect. 18 21
947 343.22 temperature 30 1440 < th dose dependent rect. 16 20
965 343.36 temperature 20 1440 > th dose dependent rect. 11 1
986 343.54 temperature 30 1440 < th dose dependent sin 4 NA
991 343.58 temperature 30 720 < th dose dependent rect. 11 21