BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0157000 Os05g0157000|AK109809
         (346 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0157000  Conserved hypothetical protein                      271   4e-73

>Os05g0157000 Conserved hypothetical protein
          Length = 346

 Score =  271 bits (694), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 177/326 (54%), Positives = 177/326 (54%)

Query: 21  VERWPRGVLERVADGVPDHRRLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXH 80
           VERWPRGVLERVADGVPDHRRLV                                    H
Sbjct: 21  VERWPRGVLERVADGVPDHRRLVRLGALGPQRPRLLRRPGLDVLLGVVPRAAAVRRRDRH 80

Query: 81  LHPGHQRAGEQPRQRLHPEQRPGDEXXXXXXXXXXXXXXXXXVGGDPHAGGVVRRGEPLG 140
           LHPGHQRAGEQPRQRLHPEQRPGDE                 VGGDPHAGGVVRRGEPLG
Sbjct: 81  LHPGHQRAGEQPRQRLHPEQRPGDERARHHQRPRRHHLPQRRVGGDPHAGGVVRRGEPLG 140

Query: 141 EPRDLVELAPHLLXXXXXXXXXXXXXXXXEPVGEHGAGEEPDEHPGAHHVHRPDPRPAHV 200
           EPRDLVELAPHLL                EPVGEHGAGEEPDEHPGAHHVHRPDPRPAHV
Sbjct: 141 EPRDLVELAPHLLHHPQRRAPHAPHRHRREPVGEHGAGEEPDEHPGAHHVHRPDPRPAHV 200

Query: 201 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAHAPRHAGHLRXXXXXXXXXXXXXX 260
                                            ALAHAPRHAGHLR              
Sbjct: 201 RAEQRQRHQRRRPDREPLPDRRRRVPGGVERVRALAHAPRHAGHLRDAAGVVADGAIGVD 260

Query: 261 XEPRGDGAQHPQRSQRDAVHXXXXXXXXXXXXXXXXRHDHRLVPHGEAEDHVXXXXXXXX 320
            EPRGDGAQHPQRSQRDAVH                RHDHRLVPHGEAEDHV        
Sbjct: 261 GEPRGDGAQHPQRSQRDAVHGGEPEAGVDGAGDGEDRHDHRLVPHGEAEDHVRRRPRPAR 320

Query: 321 XXXXXXXXINLKFERKFHQNLKFYKM 346
                   INLKFERKFHQNLKFYKM
Sbjct: 321 LRHRLHRPINLKFERKFHQNLKFYKM 346



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.141    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,313,773
Number of extensions: 247191
Number of successful extensions: 442
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 436
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 244
Effective length of database: 11,709,973
Effective search space: 2857233412
Effective search space used: 2857233412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)