BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0151300 Os05g0151300|J065063J05
         (253 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0151300  Rubber elongation factor family protein             379   e-105
Os07g0671800  Similar to Stress-related protein-like protein...   179   2e-45

>Os05g0151300 Rubber elongation factor family protein
          Length = 253

 Score =  379 bits (972), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/253 (80%), Positives = 203/253 (80%)

Query: 1   MADSGSDAPISNRXXXXXXXXXXXXXXXXXXXXRLRYLEFXXXXXXXXXXXXXXXXXXXK 60
           MADSGSDAPISNR                    RLRYLEF                   K
Sbjct: 1   MADSGSDAPISNRPEEEVTVEKTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAK 60

Query: 61  QGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKE 120
           QGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKE
Sbjct: 61  QGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKE 120

Query: 121 APGLARSAAAEVRQAGLVGTATGLAKSAIARAEPRARDLYTRYEPVXXXXXXXXXXXLNR 180
           APGLARSAAAEVRQAGLVGTATGLAKSAIARAEPRARDLYTRYEPV           LNR
Sbjct: 121 APGLARSAAAEVRQAGLVGTATGLAKSAIARAEPRARDLYTRYEPVAERKAAEAWAALNR 180

Query: 181 LPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVFGYPLADAA 240
           LPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVFGYPLADAA
Sbjct: 181 LPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVFGYPLADAA 240

Query: 241 TSPAPEMQPIPSQ 253
           TSPAPEMQPIPSQ
Sbjct: 241 TSPAPEMQPIPSQ 253



>Os07g0671800 Similar to Stress-related protein-like protein (Fragment)
          Length = 297

 Score =  179 bits (454), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 102/238 (42%), Positives = 128/238 (53%), Gaps = 26/238 (10%)

Query: 34  RLRYLEFXXXXXXXXXXXXXXXXXXXKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPL 93
           +LRYLEF                   K  AGPLRPGVD VE  VK VVGPVY RFHGVPL
Sbjct: 63  KLRYLEFVQVAAAQATICLAGLYALAKDHAGPLRPGVDAVESAVKGVVGPVYGRFHGVPL 122

Query: 94  DLLKFLDRKVGESVQELDRRVPPVVKE-----------APGLARSAAAEVRQAGLVGTA- 141
           D+L F+DRKV ++VQELDR +PP +K             P +AR   AEV+Q+G+ G A 
Sbjct: 123 DVLAFVDRKVDDTVQELDRHLPPTLKAASAKACAVARGVPDVARELTAEVQQSGVTGAAR 182

Query: 142 ------TGLAKSAIARAEPRARDLYTRYEPVXXXXXXXXXXXLNRLPLVPSVTRAVLPAA 195
                   +AK    R +P A+DLY RYEP            LN LPL P V +  +P A
Sbjct: 183 VAYAKVEPVAKGVYGRIQPAAKDLYVRYEPAAEHLAVSTWRSLNNLPLFPQVAQIAVPTA 242

Query: 196 ASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVFGYPLADAATSPAPEMQPIPSQ 253
           A  + +YN  +A  A +G   A YLP +PTER+++VFG          +PE QP  S+
Sbjct: 243 AYWAEKYNKVIAAAADKGYTGAQYLPAIPTERIAKVFG--------ELSPEAQPSKSE 292



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,025,857
Number of extensions: 257318
Number of successful extensions: 929
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 924
Number of HSP's successfully gapped: 2
Length of query: 253
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 154
Effective length of database: 11,866,615
Effective search space: 1827458710
Effective search space used: 1827458710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)