BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0148700 Os05g0148700|AY037805
         (457 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0148700  Armadillo-like helical domain containing protein    888   0.0  

>Os05g0148700 Armadillo-like helical domain containing protein
          Length = 457

 Score =  888 bits (2294), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/457 (93%), Positives = 428/457 (93%)

Query: 1   MATRIPGTVAASGVYYNDQYRMPCKLKGIHCMALNCIPQKAKVRKCMNGYQSTFRFCVNE 60
           MATRIPGTVAASGVYYNDQYRMPCKLKGIHCMALNCIPQKAKVRKCMNGYQSTFRFCVNE
Sbjct: 1   MATRIPGTVAASGVYYNDQYRMPCKLKGIHCMALNCIPQKAKVRKCMNGYQSTFRFCVNE 60

Query: 61  KNGQTTGQSNGSLIQQGQNFRCHSYGSHNSSETKECSLEDGTDSYRDFEEHSRGASQFSD 120
           KNGQTTGQSNGSLIQQGQNFRCHSYGSHNSSETKECSLEDGTDSYRDFEEHSRGASQFSD
Sbjct: 61  KNGQTTGQSNGSLIQQGQNFRCHSYGSHNSSETKECSLEDGTDSYRDFEEHSRGASQFSD 120

Query: 121 NQXXXXXXXXXXXQGLAEACKFVYNDAKFVNERAQNDILLLSRGITRLNKRACQDVAVLG 180
           NQ           QGLAEACKFVYNDAKFVNERAQNDILLLSRGITRLNKRACQDVAVLG
Sbjct: 121 NQVAAKKKSVKSSQGLAEACKFVYNDAKFVNERAQNDILLLSRGITRLNKRACQDVAVLG 180

Query: 181 SGFLKLDARARKDTKKIDHSVKERAARLTHFARILKEQAQSDLKKAADQHWSDGALEADL 240
           SGFLKLDARARKDTKKIDHSVKERAARLTHFARILKEQAQSDLKKAADQHWSDGALEADL
Sbjct: 181 SGFLKLDARARKDTKKIDHSVKERAARLTHFARILKEQAQSDLKKAADQHWSDGALEADL 240

Query: 241 RRADSVVRRRAMEDAFMALKFVRDIHDMMANRLQEQFAKDGSSSPANSRSFITLEKNGNT 300
           RRADSVVRRRAMEDAFMALKFVRDIHDMMANRLQEQFAKDGSSSPANSRSFITLEKNGNT
Sbjct: 241 RRADSVVRRRAMEDAFMALKFVRDIHDMMANRLQEQFAKDGSSSPANSRSFITLEKNGNT 300

Query: 301 FELFPHEVSTDQITAIEQAYWSMASALSEADGIDYTDPEELELLVATLIDLDAMDGKKSV 360
           FELFPHEVSTDQITAIEQAYWSMASALSEADGIDYTDPEELELLVATLIDLDAMDGKKSV
Sbjct: 301 FELFPHEVSTDQITAIEQAYWSMASALSEADGIDYTDPEELELLVATLIDLDAMDGKKSV 360

Query: 361 SLLAECSSSPDVNTRKXXXXXXXXXPSMWILGNAGMGALQRLAQDSNYAVARAATRAINE 420
           SLLAECSSSPDVNTRK         PSMWILGNAGMGALQRLAQDSNYAVARAATRAINE
Sbjct: 361 SLLAECSSSPDVNTRKALANALAAAPSMWILGNAGMGALQRLAQDSNYAVARAATRAINE 420

Query: 421 LTKQWELEEGDSLRFVLNQNMVSKETXXXXXXXXXTR 457
           LTKQWELEEGDSLRFVLNQNMVSKET         TR
Sbjct: 421 LTKQWELEEGDSLRFVLNQNMVSKETADDSAAADDTR 457



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.129    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,191,411
Number of extensions: 492619
Number of successful extensions: 1177
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1176
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 353
Effective length of database: 11,605,545
Effective search space: 4096757385
Effective search space used: 4096757385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)