BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0143300 Os05g0143300|AK099030
         (453 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0143300  Conserved hypothetical protein                      758   0.0  

>Os05g0143300 Conserved hypothetical protein
          Length = 453

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/453 (84%), Positives = 381/453 (84%)

Query: 1   MVGDXXXXXXXXXXXXXXXXXXXKELHGVHLPMPLQGKRPPLQPQDAAVHIEXXXXXXXX 60
           MVGD                   KELHGVHLPMPLQGKRPPLQPQDAAVHIE        
Sbjct: 1   MVGDLSSLLAAASSASPVVLAPSKELHGVHLPMPLQGKRPPLQPQDAAVHIEAAAAAAAA 60

Query: 61  XFQGQVMVXXXXXXXXXXXXXXXXVPDMAALIDVQDSHPDSVQLSLGIAEQCSRQEKILK 120
            FQGQVMV                VPDMAALIDVQDSHPDSVQLSLGIAEQCSRQEKILK
Sbjct: 61  AFQGQVMVPGHAHAGAPAAFQAFAVPDMAALIDVQDSHPDSVQLSLGIAEQCSRQEKILK 120

Query: 121 FLRSGSDVKELDVSLLTELTGHQTLPINLGTQPYIPDDKLSALPISMASQPYIPDDKLSI 180
           FLRSGSDVKELDVSLLTELTGHQTLPINLGTQPYIPDDKLSALPISMASQPYIPDDKLSI
Sbjct: 121 FLRSGSDVKELDVSLLTELTGHQTLPINLGTQPYIPDDKLSALPISMASQPYIPDDKLSI 180

Query: 181 YEFELDEPQQYLPENQLVIPDPLVEFFQSHGSALTIDQNRRILFNGNGDDMRYLLSIVLA 240
           YEFELDEPQQYLPENQLVIPDPLVEFFQSHGSALTIDQNRRILFNGNGDDMRYLLSIVLA
Sbjct: 181 YEFELDEPQQYLPENQLVIPDPLVEFFQSHGSALTIDQNRRILFNGNGDDMRYLLSIVLA 240

Query: 241 FNMSKREISSCKTAYLVPYFEXXXXXXXXXXXXXXXLASTAVDASKSTANGXXXXXXXXX 300
           FNMSKREISSCKTAYLVPYFE               LASTAVDASKSTANG         
Sbjct: 241 FNMSKREISSCKTAYLVPYFERKRRSRASSHASNSKLASTAVDASKSTANGKSKSSSRKK 300

Query: 301 XXXXNIKERDLYPKNYFHASEAFLSMLLDKDNSSSTIHSLKKAGPEISELLTKCSIGIAG 360
               NIKERDLYPKNYFHASEAFLSMLLDKDNSSSTIHSLKKAGPEISELLTKCSIGIAG
Sbjct: 301 QKSKNIKERDLYPKNYFHASEAFLSMLLDKDNSSSTIHSLKKAGPEISELLTKCSIGIAG 360

Query: 361 TGLAVLLSVVCKMATGMKSPIAATRLVNTGVGLGLFWLSWAVNGLRDTITSIFRSPGDMN 420
           TGLAVLLSVVCKMATGMKSPIAATRLVNTGVGLGLFWLSWAVNGLRDTITSIFRSPGDMN
Sbjct: 361 TGLAVLLSVVCKMATGMKSPIAATRLVNTGVGLGLFWLSWAVNGLRDTITSIFRSPGDMN 420

Query: 421 LKDEEVAVRIQKSMNDILFRAITILAITAFKFA 453
           LKDEEVAVRIQKSMNDILFRAITILAITAFKFA
Sbjct: 421 LKDEEVAVRIQKSMNDILFRAITILAITAFKFA 453



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,075,482
Number of extensions: 445283
Number of successful extensions: 979
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 976
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 349
Effective length of database: 11,605,545
Effective search space: 4050335205
Effective search space used: 4050335205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)