Os05g0143300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0143300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.86 | 0.44 | 13 | -1.29 | 2.22 | -1.12 | -0.294 | -0.544 | -0.671 | 8.41 | 20.59 | 10 | -- | -- |
| 88.75 | 0.439 | 13 | -1.31 | 2.22 | -1.12 | 0.185 | -- | -0.678 | 8.41 | 20 | 9 | -- | -- |
| 88.02 | 0.437 | 13 | -1.3 | 2.22 | -1.12 | -- | -0.41 | -0.674 | 8.42 | 20.45 | 9 | -- | -- |
| 88.81 | 0.439 | 13 | -1.27 | 2.2 | -1.14 | -- | -- | -0.665 | 8.39 | 20 | 8 | -- | -- |
| 253.64 | 0.742 | 13 | -1.17 | -- | -2.05 | -- | -0.139 | -0.674 | -- | 9.868 | 8 | -- | -- |
| 111.38 | 0.495 | 13 | -1.26 | 3.04 | -- | 0.337 | -- | -0.656 | 9.59 | -- | -- | -- | -- |
| 111.8 | 0.495 | 13 | -1.24 | 3.04 | -- | -- | -- | -0.655 | 9.59 | -- | -- | -- | -- |
| 249.12 | 0.738 | 13 | -1.17 | -- | -2.06 | -- | -- | -0.652 | -- | 10 | 13 | -- | -- |
| 131.52 | 0.534 | 12.9 | -- | 2.25 | -1.05 | -- | -- | -0.518 | 8.55 | 20 | 7 | -- | -- |
| 658.4 | 1.2 | 13 | -1.27 | -- | -- | -- | -- | -0.648 | -- | -- | -- | -- | -- |
| 152.62 | 0.578 | 12.9 | -- | 3.04 | -- | -- | -- | -0.517 | 9.62 | -- | -- | -- | -- |
| 284.21 | 0.785 | 13 | -- | -- | -2.08 | -- | -- | -0.525 | -- | 10 | 3 | -- | -- |
| 700.82 | 1.24 | 13 | -- | -- | -- | -- | -- | -0.508 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.83 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 15 |
| 14 | 79.89 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 16 |
| 15 | 80.04 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 18 | 6 |
| 17 | 80.23 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 18 | 6 |
| 30 | 80.95 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 16 | 8 |
| 34 | 81.10 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 2 | 19 |
| 43 | 81.46 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 9 |
| 46 | 81.51 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 24 | 21 |
| 71 | 82.39 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 8 | 16 |
| 81 | 82.52 | wind | 7.0 | 270 | < th | dose independent | rect. | 18 | 6 |
| 82 | 82.52 | radiation | 1.0 | 270 | < th | dose independent | rect. | 18 | 6 |
| 84 | 82.53 | radiation | 1.0 | 270 | < th | dose independent | rect. | 16 | 8 |
| 88 | 82.57 | humidity | 60.0 | 270 | > th | dose independent | rect. | 18 | 6 |
| 95 | 82.70 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 6 |
| 105 | 82.86 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 112 | 82.93 | temperature | 15.0 | 270 | > th | dose independent | rect. | 24 | 18 |
| 116 | 82.98 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 24 | 18 |
| 117 | 82.99 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 6 |
| 119 | 82.99 | radiation | 20.0 | 270 | < th | dose independent | rect. | 18 | 6 |
| 123 | 83.01 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 6 |
| 127 | 83.08 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 18 |
| 129 | 83.11 | radiation | 10.0 | 10 | < th | dose independent | rect. | 2 | 19 |
| 144 | 83.22 | radiation | 10.0 | 10 | < th | dose independent | rect. | 24 | 21 |
| 162 | 83.39 | radiation | 10.0 | 10 | < th | dose dependent | sin | 0 | NA |
| 171 | 83.49 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 18 | 8 |
| 196 | 83.62 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 18 |
| 200 | 83.62 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 18 |
| 204 | 83.68 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 20 | 6 |
| 216 | 83.77 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 18 |
| 243 | 83.95 | radiation | 1.0 | 270 | < th | dose independent | rect. | 8 | 16 |
| 275 | 84.16 | temperature | 20.0 | 720 | > th | dose dependent | sin | 16 | NA |
| 308 | 84.43 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 24 | 9 |
| 309 | 84.44 | radiation | 1.0 | 270 | < th | dose dependent | sin | 16 | NA |
| 327 | 84.60 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 15 |
| 329 | 84.60 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 15 |
| 369 | 84.76 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 6 |
| 372 | 84.76 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 6 |
| 392 | 84.86 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 9 |
| 395 | 84.86 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 9 |
| 397 | 84.88 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 6 |
| 408 | 84.93 | wind | 9.0 | 270 | < th | dose independent | rect. | 9 | 15 |
| 418 | 84.97 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 6 |
| 420 | 84.98 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 421 | 84.98 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 422 | 84.98 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 9 |
| 423 | 84.98 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 15 |
| 439 | 85.06 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 469 | 85.19 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 9 |
| 473 | 85.22 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 21 | 1 |
| 506 | 85.40 | temperature | 20.0 | 10 | > th | dose independent | rect. | 16 | 14 |
| 518 | 85.46 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 24 | 9 |
| 520 | 85.47 | humidity | 50.0 | 270 | > th | dose independent | rect. | 24 | 9 |
| 521 | 85.47 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 9 |
| 522 | 85.47 | temperature | 10.0 | 270 | > th | dose independent | rect. | 9 | 15 |
| 524 | 85.49 | wind | 1.0 | 270 | > th | dose independent | rect. | 19 | 5 |
| 525 | 85.49 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 9 |
| 527 | 85.49 | wind | 9.0 | 270 | < th | dose dependent | rect. | 18 | 6 |
| 556 | 85.59 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 18 |
| 570 | 85.64 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 6 |
| 572 | 85.64 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 6 |
| 575 | 85.64 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 18 |
| 576 | 85.64 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 18 |
| 592 | 85.69 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 18 |
| 605 | 85.73 | radiation | 40.0 | 270 | < th | dose independent | rect. | 24 | 9 |
| 610 | 85.75 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 16 | 2 |
| 618 | 85.78 | temperature | 30.0 | 270 | < th | dose independent | rect. | 24 | 9 |
| 628 | 85.81 | humidity | 90.0 | 270 | < th | dose independent | rect. | 13 | 6 |
| 630 | 85.82 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 9 |
| 632 | 85.82 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 9 |
| 635 | 85.84 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 6 |
| 636 | 85.84 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 6 |
| 663 | 85.92 | wind | 9.0 | 270 | < th | dose dependent | rect. | 19 | 4 |
| 667 | 85.94 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 4 |
| 670 | 85.95 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 6 |
| 681 | 86.02 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 24 | 8 |
| 691 | 86.06 | radiation | 10.0 | 270 | < th | dose independent | rect. | 24 | 8 |
| 700 | 86.10 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 15 |
| 709 | 86.14 | humidity | 70.0 | 270 | > th | dose independent | rect. | 24 | 8 |
| 732 | 86.23 | temperature | 30.0 | 720 | < th | dose dependent | sin | 17 | NA |
| 815 | 86.38 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 839 | 86.46 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 6 |
| 885 | 86.58 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 15 |
| 903 | 86.62 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 955 | 86.72 | wind | 7.0 | 270 | < th | dose independent | rect. | 18 | 20 |
| 1000 | 86.83 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 17 | 2 |