BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0133100 Os05g0133100|AK068407
         (212 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0133100  Similar to PII protein (Fragment)                   288   2e-78

>Os05g0133100 Similar to PII protein (Fragment)
          Length = 212

 Score =  288 bits (737), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 155/212 (73%), Positives = 155/212 (73%)

Query: 1   MSSPXXXXXXXXSCGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLQRPLRVNHXXXX 60
           MSSP        SCGV                              GLQRPLRVNH    
Sbjct: 1   MSSPATAAAAAASCGVLRHHHPPASPRPPPTTTTTTSRLLLASRSRGLQRPLRVNHAPPR 60

Query: 61  XXXXXXXXXXXXXXXGYQPESEFYKVEAILRPWRVPYVSSGLLQMGIRGVTVSDVRGFGA 120
                          GYQPESEFYKVEAILRPWRVPYVSSGLLQMGIRGVTVSDVRGFGA
Sbjct: 61  RLPPTAARAQSAAAAGYQPESEFYKVEAILRPWRVPYVSSGLLQMGIRGVTVSDVRGFGA 120

Query: 121 QGGSTERHEGSEFAEDTFIDKVKMEIVVSKDQVEAVVDKIIEKARTGEIGDGKIFLIPVS 180
           QGGSTERHEGSEFAEDTFIDKVKMEIVVSKDQVEAVVDKIIEKARTGEIGDGKIFLIPVS
Sbjct: 121 QGGSTERHEGSEFAEDTFIDKVKMEIVVSKDQVEAVVDKIIEKARTGEIGDGKIFLIPVS 180

Query: 181 DVIRIRTGERGERAERMAGGLADKLSSAMPIS 212
           DVIRIRTGERGERAERMAGGLADKLSSAMPIS
Sbjct: 181 DVIRIRTGERGERAERMAGGLADKLSSAMPIS 212



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,915,834
Number of extensions: 182485
Number of successful extensions: 419
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 418
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 115
Effective length of database: 11,971,043
Effective search space: 1376669945
Effective search space used: 1376669945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)