Os05g0133100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PII protein (Fragment).
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Os05g0133100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PII protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.84 | 0.265 | 12.3 | -0.395 | 0.466 | -1.88 | -0.863 | -0.372 | -0.128 | 23.7 | 24.78 | 1326 | -- | -- |
| 31.2 | 0.26 | 12.3 | -0.397 | 0.403 | -1.81 | -0.812 | -- | -0.119 | 23.4 | 25.1 | 1163 | -- | -- |
| 33.58 | 0.27 | 12.3 | -0.451 | 0.357 | -1.78 | -- | 0.282 | -0.144 | 23.7 | 25.05 | 1092 | -- | -- |
| 33.57 | 0.27 | 12.3 | -0.417 | 0.365 | -1.81 | -- | -- | -0.139 | 23.9 | 24.9 | 1096 | -- | -- |
| 38.46 | 0.289 | 12.3 | -0.525 | -- | -1.94 | -- | 0.492 | -0.202 | -- | 27.24 | 956 | -- | -- |
| 77.19 | 0.412 | 12.2 | 0.0896 | 0.547 | -- | -0.85 | -- | 0.238 | 0.188 | -- | -- | -- | -- |
| 80.31 | 0.42 | 12.2 | 0.123 | 0.549 | -- | -- | -- | 0.242 | 0.144 | -- | -- | -- | -- |
| 38.84 | 0.29 | 12.3 | -0.429 | -- | -1.91 | -- | -- | -0.185 | -- | 26.72 | 962 | -- | -- |
| 37.41 | 0.285 | 12.3 | -- | 0.364 | -1.62 | -- | -- | -0.0608 | 23.9 | 25.01 | 1065 | -- | -- |
| 99.32 | 0.466 | 12.2 | 0.141 | -- | -- | -- | -- | 0.25 | -- | -- | -- | -- | -- |
| 80.71 | 0.42 | 12.2 | -- | 0.551 | -- | -- | -- | 0.228 | 0.156 | -- | -- | -- | -- |
| 43.1 | 0.306 | 12.3 | -- | -- | -1.75 | -- | -- | -0.102 | -- | 26.63 | 922 | -- | -- |
| 99.84 | 0.466 | 12.2 | -- | -- | -- | -- | -- | 0.235 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.36 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 20 |
| 9 | 31.94 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 3 |
| 30 | 32.66 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 20 |
| 58 | 32.82 | temperature | 25 | 1440 | < th | dose dependent | rect. | 14 | 22 |
| 79 | 32.88 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 83 | 32.91 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 119 | 33.04 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 144 | 33.12 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 240 | 33.43 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 247 | 33.46 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 336 | 33.76 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 3 |
| 337 | 33.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 344 | 33.78 | temperature | 25 | 1440 | < th | dose dependent | sin | 5 | NA |
| 518 | 34.40 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 15 |
| 589 | 34.51 | temperature | 10 | 1440 | > th | dose dependent | sin | 10 | NA |
| 846 | 34.85 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 952 | 35.00 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 993 | 35.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 994 | 35.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |