BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0120700 Os05g0120700|AK062874
         (281 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0120700  ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-trans...   525   e-149
Os03g0281600  Similar to Ca2+-ATPase                              108   6e-24

>Os05g0120700 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter family protein
          Length = 281

 Score =  525 bits (1353), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 261/281 (92%), Positives = 261/281 (92%)

Query: 1   VLRILAVFLHCCRYMISSNIGEVASIFLTSALGIPEGLIPVQLLWVNLVTDGPPATALGF 60
           VLRILAVFLHCCRYMISSNIGEVASIFLTSALGIPEGLIPVQLLWVNLVTDGPPATALGF
Sbjct: 1   VLRILAVFLHCCRYMISSNIGEVASIFLTSALGIPEGLIPVQLLWVNLVTDGPPATALGF 60

Query: 61  NPPDKDIMKKPPRKSDDSLITPWILFRYLVIGLYVGIATVGIFVIWYTHGSFMGIDLTGD 120
           NPPDKDIMKKPPRKSDDSLITPWILFRYLVIGLYVGIATVGIFVIWYTHGSFMGIDLTGD
Sbjct: 61  NPPDKDIMKKPPRKSDDSLITPWILFRYLVIGLYVGIATVGIFVIWYTHGSFMGIDLTGD 120

Query: 121 GHTLVSYSQLSNWGQCSTWNNFTVTPFTAGARTFTFDDNPCEYFHGGKVKATTLSLSVLV 180
           GHTLVSYSQLSNWGQCSTWNNFTVTPFTAGARTFTFDDNPCEYFHGGKVKATTLSLSVLV
Sbjct: 121 GHTLVSYSQLSNWGQCSTWNNFTVTPFTAGARTFTFDDNPCEYFHGGKVKATTLSLSVLV 180

Query: 181 AIEMFNSLNALSEDTSLLRMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQVFGIXXXXXX 240
           AIEMFNSLNALSEDTSLLRMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQVFGI      
Sbjct: 181 AIEMFNSLNALSEDTSLLRMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQVFGIVPLSLN 240

Query: 241 XXXXXXXXXXXXXXIDEVLKFVGRCTSSSGPKRRTRKQKGE 281
                         IDEVLKFVGRCTSSSGPKRRTRKQKGE
Sbjct: 241 EWLLVLLVALPVVLIDEVLKFVGRCTSSSGPKRRTRKQKGE 281



>Os03g0281600 Similar to Ca2+-ATPase
          Length = 845

 Score =  108 bits (269), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 51/51 (100%), Positives = 51/51 (100%)

Query: 13  RYMISSNIGEVASIFLTSALGIPEGLIPVQLLWVNLVTDGPPATALGFNPP 63
           RYMISSNIGEVASIFLTSALGIPEGLIPVQLLWVNLVTDGPPATALGFNPP
Sbjct: 795 RYMISSNIGEVASIFLTSALGIPEGLIPVQLLWVNLVTDGPPATALGFNPP 845



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.141    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,585,097
Number of extensions: 382703
Number of successful extensions: 998
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 997
Number of HSP's successfully gapped: 2
Length of query: 281
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 181
Effective length of database: 11,814,401
Effective search space: 2138406581
Effective search space used: 2138406581
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)