BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0105900 Os05g0105900|AK063761
         (380 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0105900  RNA-binding region RNP-1 (RNA recognition moti...   272   4e-73
Os01g0959000  RNA-binding region RNP-1 (RNA recognition moti...   179   4e-45

>Os05g0105900 RNA-binding region RNP-1 (RNA recognition motif) domain containing
           protein
          Length = 380

 Score =  272 bits (695), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 138/170 (81%), Positives = 138/170 (81%)

Query: 64  ESTVLHVDHLSRNVNEDHLKEIFENYGEVVNVELSMDRVVNLPRGYGYVEFKNRADAEKA 123
           ESTVLHVDHLSRNVNEDHLKEIFENYGEVVNVELSMDRVVNLPRGYGYVEFKNRADAEKA
Sbjct: 64  ESTVLHVDHLSRNVNEDHLKEIFENYGEVVNVELSMDRVVNLPRGYGYVEFKNRADAEKA 123

Query: 124 LLYLDGGQIDGNVVKVRFALPPQQQRAAASPKALHPSPKRDVVDHNKVGPSAEKATKQQX 183
           LLYLDGGQIDGNVVKVRFALPPQQQRAAASPKALHPSPKRDVVDHNKVGPSAEKATKQQ 
Sbjct: 124 LLYLDGGQIDGNVVKVRFALPPQQQRAAASPKALHPSPKRDVVDHNKVGPSAEKATKQQP 183

Query: 184 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSPPIRRRTAPSPIRHGGT 233
                                          DSPPIRRRTAPSPIRHGGT
Sbjct: 184 RKPASPQRKPAPSPRRRSPPSRRVESPRCRPDSPPIRRRTAPSPIRHGGT 233



>Os01g0959000 RNA-binding region RNP-1 (RNA recognition motif) domain containing
           protein
          Length = 432

 Score =  179 bits (453), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 100/176 (56%), Positives = 113/176 (64%), Gaps = 7/176 (3%)

Query: 64  ESTVLHVDHLSRNVNEDHLKEIFENYGEVVNVELSMDRVVNLPRGYGYVEFKNRADAEKA 123
           ES VLH+DHLSRNVNE HLKEIF N+GEVVNVELSMDR+VNLPRGYGY+EFK R DAEKA
Sbjct: 105 ESVVLHIDHLSRNVNEAHLKEIFGNFGEVVNVELSMDRMVNLPRGYGYIEFKKRTDAEKA 164

Query: 124 LLYLDGGQIDGNVVKVRFALPPQQQRAAASPKALHPSPKRDVVDHNKVGPSAEKATKQQX 183
           LLY+DGGQIDGNVVK+RF L P +QRA++  KA  P PKRDV  + K  PSAEK  +Q+ 
Sbjct: 165 LLYMDGGQIDGNVVKLRFTLAP-RQRASSPMKAPPPPPKRDVPHNEKGAPSAEKDVQQRR 223

Query: 184 XXXXXXXXXXXXXXXX------XXXXXXXXXXXXXXXDSPPIRRRTAPSPIRHGGT 233
                                                DSPPIRRR   SP+R G T
Sbjct: 224 EPSPRRKPASPPRKRTPPNRRIESPRRQPDPSPRRRPDSPPIRRRADASPVRRGDT 279



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,479,836
Number of extensions: 194498
Number of successful extensions: 807
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 835
Number of HSP's successfully gapped: 2
Length of query: 380
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 277
Effective length of database: 11,657,759
Effective search space: 3229199243
Effective search space used: 3229199243
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)