Os05g0105900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os05g0105900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.2 | 0.339 | 11.8 | -0.748 | 1.05 | -1.08 | -0.349 | -0.842 | 0.0453 | 24 | 26.83 | 334 | -- | -- |
| 53.01 | 0.339 | 11.8 | -0.898 | 1.07 | -1.04 | -0.438 | -- | 0.0126 | 0.0323 | 27.51 | 313 | -- | -- |
| 52.65 | 0.338 | 11.8 | -0.737 | 1.08 | -1.09 | -- | -0.891 | 0.0442 | 0.107 | 27.18 | 309 | -- | -- |
| 53.71 | 0.341 | 11.8 | -0.901 | 1.09 | -1.05 | -- | -- | 0.0112 | 0.085 | 27.6 | 312 | -- | -- |
| 95.36 | 0.455 | 11.8 | -0.975 | -- | -1.47 | -- | -0.202 | -0.0728 | -- | 29.25 | 844 | -- | -- |
| 68.43 | 0.388 | 11.8 | -0.634 | 1.02 | -- | -0.492 | -- | 0.241 | 23.1 | -- | -- | -- | -- |
| 69.46 | 0.39 | 11.8 | -0.614 | 1.02 | -- | -- | -- | 0.242 | 23.2 | -- | -- | -- | -- |
| 95.3 | 0.455 | 11.8 | -1.03 | -- | -1.53 | -- | -- | -0.0626 | -- | 29.5 | 851 | -- | -- |
| 72.23 | 0.396 | 11.8 | -- | 1.05 | -0.685 | -- | -- | 0.183 | 23.7 | 27.53 | 291 | -- | -- |
| 134.97 | 0.543 | 11.7 | -0.59 | -- | -- | -- | -- | 0.251 | -- | -- | -- | -- | -- |
| 79.41 | 0.417 | 11.7 | -- | 1.02 | -- | -- | -- | 0.311 | 23.1 | -- | -- | -- | -- |
| 120.07 | 0.51 | 11.8 | -- | -- | -1.13 | -- | -- | 0.122 | -- | 29.7 | 824 | -- | -- |
| 144.15 | 0.56 | 11.7 | -- | -- | -- | -- | -- | 0.317 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.58 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 12 |
| 5 | 49.23 | temperature | 20 | 270 | > th | dose dependent | sin | 8 | NA |
| 6 | 49.32 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 11 | 49.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 46 | 50.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 16 |
| 72 | 51.59 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 95 | 51.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 13 |
| 104 | 52.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 11 |
| 105 | 52.08 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 108 | 52.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 112 | 52.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 5 |
| 142 | 52.37 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 180 | 52.67 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 6 |
| 190 | 52.73 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 202 | 52.78 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 220 | 52.83 | temperature | 25 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 287 | 53.02 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 325 | 53.12 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 7 |
| 339 | 53.16 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 359 | 53.20 | temperature | 20 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 399 | 53.28 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 416 | 53.32 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 19 |
| 488 | 53.45 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 489 | 53.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 560 | 53.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 7 |
| 577 | 53.62 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 2 |
| 619 | 53.70 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 629 | 53.71 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 674 | 53.78 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 5 |
| 677 | 53.78 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 19 |
| 679 | 53.78 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 710 | 53.82 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 18 |
| 717 | 53.83 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 743 | 53.85 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 754 | 53.85 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 757 | 53.86 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 2 |
| 758 | 53.86 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 21 |
| 802 | 53.90 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 820 | 53.92 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 4 |
| 936 | 54.00 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 23 |