BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0105000 Os05g0105000|AK121285
(1084 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0105000 Similar to Methionine S-methyltransferase (EC ... 2141 0.0
>Os05g0105000 Similar to Methionine S-methyltransferase (EC 2.1.1.12) (AdoMet:Met
S- methyltransferase) (Hv-MMT1)
Length = 1084
Score = 2141 bits (5547), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1040/1084 (95%), Positives = 1040/1084 (95%)
Query: 1 MAAAAEVESFLXXXXXXXXXXXXXXXXVLERLQDPASRPDARRLLGAVRRRFAGPAAGEE 60
MAAAAEVESFL VLERLQDPASRPDARRLLGAVRRRFAGPAAGEE
Sbjct: 1 MAAAAEVESFLATCAASGDAAYGAAKAVLERLQDPASRPDARRLLGAVRRRFAGPAAGEE 60
Query: 61 CFRTFHFRIHDVVLDPHLRGFQQRKKLTMMEIPSIFIPEDWSFTFYEGLNRHPDSIFRDK 120
CFRTFHFRIHDVVLDPHLRGFQQRKKLTMMEIPSIFIPEDWSFTFYEGLNRHPDSIFRDK
Sbjct: 61 CFRTFHFRIHDVVLDPHLRGFQQRKKLTMMEIPSIFIPEDWSFTFYEGLNRHPDSIFRDK 120
Query: 121 TVAELGCGNGWISIALAEKWSPSKVYGLDINPRAVKIAWINLYLNALDDDGLPIYDGEGK 180
TVAELGCGNGWISIALAEKWSPSKVYGLDINPRAVKIAWINLYLNALDDDGLPIYDGEGK
Sbjct: 121 TVAELGCGNGWISIALAEKWSPSKVYGLDINPRAVKIAWINLYLNALDDDGLPIYDGEGK 180
Query: 181 TLLDRVEFYESDLLSYCRDNKIELDRIVGCIPQILNPNPEAMSKIVTENSSEEFLYSLSN 240
TLLDRVEFYESDLLSYCRDNKIELDRIVGCIPQILNPNPEAMSKIVTENSSEEFLYSLSN
Sbjct: 181 TLLDRVEFYESDLLSYCRDNKIELDRIVGCIPQILNPNPEAMSKIVTENSSEEFLYSLSN 240
Query: 241 YCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQGVCERLFRRRGFRITK 300
YCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQGVCERLFRRRGFRITK
Sbjct: 241 YCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQGVCERLFRRRGFRITK 300
Query: 301 LWQTKIMQAADTDISALVEIEKNSRHRFEFFMDLVGDQPVCARTAWAYMKSGGRISHALS 360
LWQTKIMQAADTDISALVEIEKNSRHRFEFFMDLVGDQPVCARTAWAYMKSGGRISHALS
Sbjct: 301 LWQTKIMQAADTDISALVEIEKNSRHRFEFFMDLVGDQPVCARTAWAYMKSGGRISHALS 360
Query: 361 VYSCQLRQPNQVKKIFEFLKDGFHEXXXXXXXXXXXXXXXXEKIPFLAYLASFLKENKYN 420
VYSCQLRQPNQVKKIFEFLKDGFHE EKIPFLAYLASFLKENKYN
Sbjct: 361 VYSCQLRQPNQVKKIFEFLKDGFHEVSSSLDLSFDDDSVADEKIPFLAYLASFLKENKYN 420
Query: 421 PCEPPAGCLNFRNLVAGFMKSYHHIPLTPDNVVVFPSRAVAIENALRLFSPALAIVDEHL 480
PCEPPAGCLNFRNLVAGFMKSYHHIPLTPDNVVVFPSRAVAIENALRLFSPALAIVDEHL
Sbjct: 421 PCEPPAGCLNFRNLVAGFMKSYHHIPLTPDNVVVFPSRAVAIENALRLFSPALAIVDEHL 480
Query: 481 TRHLPKQWLTSLAIEGKAKDTVTVIEAPRQSDLLIELIRKLKPQVVVTGMAQFEAITSAA 540
TRHLPKQWLTSLAIEGKAKDTVTVIEAPRQSDLLIELIRKLKPQVVVTGMAQFEAITSAA
Sbjct: 481 TRHLPKQWLTSLAIEGKAKDTVTVIEAPRQSDLLIELIRKLKPQVVVTGMAQFEAITSAA 540
Query: 541 FENLLSVTKDVGSRLFIDIXXXXXXXXXXXXNGVLKYLAGKTLPSHAAILCGLVKNQVYS 600
FENLLSVTKDVGSRLFIDI NGVLKYLAGKTLPSHAAILCGLVKNQVYS
Sbjct: 541 FENLLSVTKDVGSRLFIDISEHLELSSLPSSNGVLKYLAGKTLPSHAAILCGLVKNQVYS 600
Query: 601 DLEVAFAISEDAAVYRALSQTIELLEGHTSQISQHYYGCLFHELLAFQIADRHPQQERLP 660
DLEVAFAISEDAAVYRALSQTIELLEGHTSQISQHYYGCLFHELLAFQIADRHPQQERLP
Sbjct: 601 DLEVAFAISEDAAVYRALSQTIELLEGHTSQISQHYYGCLFHELLAFQIADRHPQQERLP 660
Query: 661 AEVIPQKMIGFSSSAMSTLKEAEFFIPDSKKSSVIHMDLDRSFLPVPSAVNASIFESFVR 720
AEVIPQKMIGFSSSAMSTLKEAEFFIPDSKKSSVIHMDLDRSFLPVPSAVNASIFESFVR
Sbjct: 661 AEVIPQKMIGFSSSAMSTLKEAEFFIPDSKKSSVIHMDLDRSFLPVPSAVNASIFESFVR 720
Query: 721 QNITESETDVRSSIQQLVKDSYGFPADGCSEILYGNTCLALFNKLALCCIQDQGTLLFPL 780
QNITESETDVRSSIQQLVKDSYGFPADGCSEILYGNTCLALFNKLALCCIQDQGTLLFPL
Sbjct: 721 QNITESETDVRSSIQQLVKDSYGFPADGCSEILYGNTCLALFNKLALCCIQDQGTLLFPL 780
Query: 781 GANGHYVSAAKFVNANTLTIPTKLESGFKIEPRVLADTLETVSRPWVYISGPTINPTGFL 840
GANGHYVSAAKFVNANTLTIPTKLESGFKIEPRVLADTLETVSRPWVYISGPTINPTGFL
Sbjct: 781 GANGHYVSAAKFVNANTLTIPTKLESGFKIEPRVLADTLETVSRPWVYISGPTINPTGFL 840
Query: 841 YSDSDIQELLSVCGKYGARVVIDTSFSGLEFQTDGWSRWNLERCLSAVNCPKPSFSVALL 900
YSDSDIQELLSVCGKYGARVVIDTSFSGLEFQTDGWSRWNLERCLSAVNCPKPSFSVALL
Sbjct: 841 YSDSDIQELLSVCGKYGARVVIDTSFSGLEFQTDGWSRWNLERCLSAVNCPKPSFSVALL 900
Query: 901 GELSFELTAAGHDFGFLILNDSSLVDTFHSFPSLSRPHSTLKYTFKKLLGLKNQKDEHFS 960
GELSFELTAAGHDFGFLILNDSSLVDTFHSFPSLSRPHSTLKYTFKKLLGLKNQKDEHFS
Sbjct: 901 GELSFELTAAGHDFGFLILNDSSLVDTFHSFPSLSRPHSTLKYTFKKLLGLKNQKDEHFS 960
Query: 961 NLIMEQKDTLKSRADHLIKTLEGCGWDVAGSHGGISMLAKPTAYIGKIIKVDGFDGKLDG 1020
NLIMEQKDTLKSRADHLIKTLEGCGWDVAGSHGGISMLAKPTAYIGKIIKVDGFDGKLDG
Sbjct: 961 NLIMEQKDTLKSRADHLIKTLEGCGWDVAGSHGGISMLAKPTAYIGKIIKVDGFDGKLDG 1020
Query: 1021 CNIKEAILRSTGLCINSSSWTGIPDHCRFSFALESSEFERAMGCIVRFKELVLGSKAFHQ 1080
CNIKEAILRSTGLCINSSSWTGIPDHCRFSFALESSEFERAMGCIVRFKELVLGSKAFHQ
Sbjct: 1021 CNIKEAILRSTGLCINSSSWTGIPDHCRFSFALESSEFERAMGCIVRFKELVLGSKAFHQ 1080
Query: 1081 INGN 1084
INGN
Sbjct: 1081 INGN 1084
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 35,072,945
Number of extensions: 1452952
Number of successful extensions: 3272
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3270
Number of HSP's successfully gapped: 1
Length of query: 1084
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 973
Effective length of database: 11,240,047
Effective search space: 10936565731
Effective search space used: 10936565731
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 161 (66.6 bits)