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Os05g0105000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Methionine S-methyltransferase (EC 2.1.1.12) (AdoMet:Met S- methyltransferase) (Hv-MMT1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.8 (0.0184) R2 : 0.753
β1 : 1.1 (0.0674) R2dD : 0.149 R2D : 0.118
β2 : 1.57 (0.0479) R2dC : 0.585 R2C : 0.593
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.276 (0.0393) R2dN8 : 0.0358 R2N8 : 0.00814
σ : 0.346
deviance : 54.58
__
_____
C
peak time of C : 5.35
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
47.77 0.325 13.8 0.955 1.57 -2.39 0.691 -2.27 0.249 5.39 14.82 642 -- --
47.85 0.322 13.8 0.993 1.58 -1.3 0.687 -- 0.253 5.39 15 496 -- --
48.92 0.326 13.8 0.962 1.57 -2.36 -- -2.07 0.246 5.35 14.85 614 -- --
48.92 0.326 13.8 0.98 1.58 -1.38 -- -- 0.246 5.35 14.9 615 -- --
176.34 0.618 13.8 0.958 -- -2.19 -- -1.58 0.268 -- 15.3 1089 -- --
53.35 0.342 13.8 1.09 1.57 -- 0.708 -- 0.279 5.39 -- -- -- --
54.58 0.346 13.8 1.1 1.57 -- -- -- 0.276 5.35 -- -- -- --
176.31 0.618 13.8 0.992 -- -1.31 -- -- 0.27 -- 15.61 1133 -- --
64.46 0.374 13.8 -- 1.56 -1.32 -- -- 0.0925 5.53 16.8 7806 -- --
183.24 0.633 13.8 1.15 -- -- -- -- 0.315 -- -- -- -- --
86.21 0.434 13.8 -- 1.59 -- -- -- 0.154 5.32 -- -- -- --
188.55 0.64 13.9 -- -- -1.06 -- -- -0.0502 -- 16.75 32700 -- --
218.07 0.689 13.8 -- -- -- -- -- 0.187 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 42.03 temperature 15.0 270 > th dose independent rect. 16 23
3 43.20 temperature 15.0 270 > th dose independent rect. 9 13
6 43.85 temperature 15.0 90 > th dose independent rect. 19 20
11 44.12 temperature 15.0 720 > th dose independent rect. 10 19
15 44.36 temperature 15.0 720 > th dose independent rect. 10 11
16 44.43 temperature 15.0 720 > th dose independent rect. 17 13
18 44.54 atmosphere 1010.0 270 < th dose independent rect. 19 2
20 44.59 temperature 15.0 1440 > th dose independent rect. 16 5
21 44.62 temperature 15.0 270 > th dose independent rect. 19 2
22 44.63 temperature 15.0 720 > th dose independent rect. 18 11
26 44.77 humidity 90.0 720 < th dose independent rect. 9 6
29 44.86 temperature 15.0 720 > th dose independent rect. 9 6
33 44.94 atmosphere 1010.0 90 < th dose independent rect. 19 5
37 45.06 temperature 15.0 10 > th dose independent rect. 19 5
52 45.20 temperature 15.0 90 > th dose independent rect. 19 10
61 45.30 temperature 15.0 720 > th dose independent rect. 3 18
75 45.47 temperature 15.0 720 > th dose independent rect. 1 21
84 45.56 temperature 15.0 10 > th dose independent rect. 19 11
94 45.63 atmosphere 1010.0 90 < th dose independent rect. 19 18
99 45.69 atmosphere 1010.0 30 < th dose independent rect. 19 20
102 45.76 temperature 15.0 1440 > th dose independent rect. 5 11
104 45.77 temperature 15.0 90 > th dose independent rect. 19 14
105 45.77 temperature 15.0 720 > th dose independent rect. 13 20
115 45.82 radiation 20.0 4320 < th dose independent rect. 20 10
128 45.94 wind 7.0 270 < th dose independent rect. 13 14
139 46.00 temperature 30.0 90 < th dose independent rect. 19 20
160 46.13 temperature 20.0 270 > th dose independent rect. 3 10
164 46.15 wind 1.0 90 > th dose dependent rect. 19 4
168 46.18 temperature 10.0 270 > th dose dependent rect. 19 2
179 46.21 temperature 10.0 90 > th dose dependent rect. 19 5
182 46.22 temperature 10.0 43200 > th dose independent rect. 15 5
187 46.24 atmosphere 1015.0 270 < th dose dependent rect. 13 4
194 46.27 atmosphere 1015.0 90 < th dose dependent rect. 13 6
195 46.28 temperature 25.0 270 > th dose independent rect. 13 4
204 46.32 temperature 15.0 720 > th dose independent rect. 5 23
211 46.36 radiation 40.0 90 < th dose independent rect. 19 19
216 46.39 temperature 25.0 270 > th dose independent rect. 15 1
223 46.42 radiation 1.0 270 < th dose dependent rect. 17 4
228 46.44 atmosphere 1010.0 90 < th dose independent rect. 19 10
229 46.44 wind 1.0 90 > th dose dependent rect. 19 6
246 46.52 radiation 40.0 90 < th dose dependent rect. 19 18
248 46.53 atmosphere 1000.0 90 > th dose independent rect. 19 4
252 46.53 temperature 15.0 720 > th dose independent rect. 23 23
253 46.53 wind 1.0 270 > th dose dependent rect. 19 1
260 46.55 atmosphere 1010.0 270 < th dose independent rect. 17 20
264 46.56 temperature 15.0 90 > th dose independent rect. 21 23
268 46.57 wind 9.0 270 < th dose independent rect. 21 21
269 46.57 atmosphere 995.0 90 > th dose dependent rect. 19 3
276 46.61 atmosphere 1000.0 270 > th dose independent rect. 19 1
278 46.61 temperature 15.0 270 > th dose independent rect. 21 11
286 46.63 wind 7.0 90 < th dose independent rect. 14 5
287 46.63 radiation 1.0 270 < th dose independent rect. 16 5
291 46.64 temperature 15.0 1440 > th dose independent rect. 21 2
292 46.64 atmosphere 1015.0 4320 < th dose independent rect. 16 3
296 46.65 temperature 10.0 270 > th dose dependent rect. 13 4
311 46.70 temperature 30.0 90 < th dose independent rect. 19 4
312 46.70 humidity 50.0 90 > th dose independent rect. 19 4
316 46.70 radiation 1.0 90 < th dose independent rect. 19 4
321 46.70 temperature 15.0 1440 > th dose independent rect. 16 17
322 46.70 temperature 10.0 90 > th dose independent rect. 23 20
324 46.70 radiation 1.0 90 < th dose dependent rect. 19 4
335 46.72 atmosphere 1010.0 90 < th dose independent rect. 19 14
344 46.73 atmosphere 1015.0 90 < th dose dependent rect. 15 4
356 46.77 humidity 90.0 720 > th dose independent rect. 9 7
359 46.78 wind 9.0 90 < th dose independent rect. 19 4
368 46.81 temperature 15.0 720 > th dose independent sin 22 NA
374 46.82 precipitation 0.1 720 > th dose independent rect. 6 10
377 46.82 wind 9.0 90 < th dose independent rect. 23 20
385 46.83 precipitation 0.1 720 > th dose dependent rect. 6 10
398 46.85 temperature 10.0 90 > th dose dependent rect. 19 18
401 46.86 radiation 40.0 90 < th dose dependent rect. 19 16
404 46.87 precipitation 0.1 720 > th dose dependent rect. 8 7
406 46.88 temperature 15.0 270 > th dose independent sin 8 NA
407 46.88 temperature 15.0 90 > th dose independent sin 18 NA
412 46.89 temperature 15.0 270 > th dose independent sin 20 NA
423 46.90 precipitation 0.1 720 > th dose independent rect. 7 8
424 46.90 atmosphere 1010.0 270 < th dose independent rect. 9 13
428 46.91 wind 1.0 90 > th dose independent rect. 19 4
445 46.92 temperature 10.0 270 > th dose independent rect. 21 21
446 46.92 atmosphere 1015.0 270 < th dose dependent rect. 15 1
462 46.94 temperature 15.0 270 > th dose dependent rect. 14 2
473 46.96 temperature 15.0 270 > th dose independent sin 10 NA
475 46.96 radiation 1.0 270 > th dose independent rect. 13 4
490 46.97 humidity 90.0 720 > th dose dependent rect. 9 7
492 46.98 temperature 15.0 720 > th dose independent sin 15 NA
504 46.99 temperature 30.0 270 < th dose independent rect. 19 1
505 46.99 humidity 50.0 270 > th dose independent rect. 19 1
508 46.99 radiation 1.0 270 < th dose independent rect. 19 1
518 46.99 radiation 1.0 270 < th dose dependent rect. 19 1
525 47.00 precipitation 0.1 90 < th dose independent rect. 19 4
530 47.00 precipitation 0.1 90 < th dose dependent rect. 19 4
531 47.01 wind 1.0 270 > th dose independent rect. 19 1
536 47.02 wind 9.0 270 < th dose independent rect. 19 1
538 47.02 precipitation 0.1 90 < th dose independent rect. 23 20
540 47.02 precipitation 0.1 90 < th dose dependent rect. 23 20
544 47.03 atmosphere 995.0 90 > th dose independent rect. 19 20
546 47.03 wind 9.0 90 < th dose dependent rect. 15 4
557 47.05 radiation 40.0 90 < th dose independent rect. 14 5
559 47.05 precipitation 0.1 1440 < th dose independent rect. 20 7
564 47.05 precipitation 0.1 1440 < th dose dependent rect. 20 7
603 47.08 temperature 10.0 90 > th dose dependent rect. 19 11
608 47.10 radiation 1.0 270 > th dose independent rect. 15 1
626 47.11 temperature 15.0 720 > th dose independent rect. 1 14
641 47.13 wind 1.0 90 > th dose independent rect. 15 4
651 47.14 atmosphere 995.0 270 > th dose independent rect. 17 20
653 47.14 temperature 15.0 10 > th dose dependent rect. 15 4
666 47.16 temperature 10.0 90 > th dose independent rect. 15 4
668 47.16 atmosphere 1010.0 90 < th dose independent rect. 15 4
679 47.16 temperature 10.0 10 > th dose dependent rect. 14 6
689 47.17 temperature 10.0 720 > th dose dependent rect. 6 11
691 47.18 atmosphere 1015.0 1440 < th dose independent rect. 2 7
692 47.18 precipitation 0.1 270 < th dose independent rect. 13 14
699 47.18 radiation 40.0 90 < th dose dependent rect. 19 14
700 47.18 precipitation 0.1 270 < th dose dependent rect. 13 14
706 47.19 radiation 40.0 270 < th dose independent rect. 17 20
711 47.19 atmosphere 1015.0 10 < th dose dependent rect. 14 6
715 47.20 radiation 1.0 720 < th dose dependent sin 1 NA
720 47.21 atmosphere 995.0 270 > th dose independent rect. 17 5
726 47.21 wind 9.0 90 < th dose independent rect. 19 19
753 47.24 precipitation 0.1 270 < th dose independent rect. 21 21
757 47.24 precipitation 0.1 270 < th dose dependent rect. 21 21
758 47.25 temperature 15.0 720 > th dose independent sin 13 NA
760 47.25 wind 7.0 270 < th dose independent rect. 15 1
761 47.26 precipitation 0.1 720 < th dose independent sin 0 NA
769 47.26 temperature 30.0 270 < th dose independent rect. 17 20
772 47.26 precipitation 0.1 720 < th dose dependent sin 0 NA
791 47.29 temperature 25.0 10 > th dose independent rect. 15 4
801 47.30 temperature 15.0 720 > th dose independent sin 1 NA
807 47.30 atmosphere 1015.0 90 < th dose independent rect. 23 20
813 47.30 temperature 30.0 270 < th dose dependent rect. 8 13
824 47.32 precipitation 0.1 90 < th dose independent rect. 15 4
829 47.32 precipitation 0.1 90 < th dose dependent rect. 15 4
832 47.33 precipitation 0.1 270 < th dose independent rect. 3 10
841 47.33 precipitation 0.1 270 < th dose dependent rect. 3 10
844 47.34 precipitation 0.1 270 < th dose independent rect. 13 4
846 47.34 precipitation 0.1 270 < th dose dependent rect. 13 4
877 47.39 wind 9.0 1440 < th dose independent rect. 1 9
879 47.39 wind 1.0 90 > th dose independent rect. 5 14
922 47.42 humidity 70.0 270 > th dose independent rect. 22 10
923 47.42 wind 9.0 1440 < th dose independent rect. 23 11
934 47.43 humidity 90.0 270 < th dose independent rect. 13 4
982 47.45 humidity 50.0 90 > th dose dependent rect. 19 4
986 47.46 radiation 40.0 270 < th dose independent rect. 15 1