BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0690500 Os04g0690500|AK105853
         (227 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0690500  Conserved hypothetical protein                      374   e-104

>Os04g0690500 Conserved hypothetical protein
          Length = 227

 Score =  374 bits (959), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/227 (81%), Positives = 186/227 (81%)

Query: 1   MKDGVAGGGGERPCMCYFHPREEVVGVCSQCXXXXXXXXXASKTSPAAAHLLADRPLHRK 60
           MKDGVAGGGGERPCMCYFHPREEVVGVCSQC         ASKTSPAAAHLLADRPLHRK
Sbjct: 1   MKDGVAGGGGERPCMCYFHPREEVVGVCSQCLRERLLLLLASKTSPAAAHLLADRPLHRK 60

Query: 61  NSSISLPKVFALGSSFLQRLDSSRHHLRPAPHXXXXXXXXXXXXXXXLDDSFISIKFEDN 120
           NSSISLPKVFALGSSFLQRLDSSRHHLRPAPH               LDDSFISIKFEDN
Sbjct: 61  NSSISLPKVFALGSSFLQRLDSSRHHLRPAPHDSDANSDADTASIASLDDSFISIKFEDN 120

Query: 121 GKATWDSQKAAAGEKKTDTTTTAVVEHVKRGGVTRWRKQVVGRLLQLARWKRSGNGKAAA 180
           GKATWDSQKAAAGEKKTDTTTTAVVEHVKRGGVTRWRKQVVGRLLQLARWKRSGNGKAAA
Sbjct: 121 GKATWDSQKAAAGEKKTDTTTTAVVEHVKRGGVTRWRKQVVGRLLQLARWKRSGNGKAAA 180

Query: 181 CHQLGIDGKKTAEXXXXXXXXXXXXXXXXXWIRTLTITRRPPAMPLS 227
           CHQLGIDGKKTAE                 WIRTLTITRRPPAMPLS
Sbjct: 181 CHQLGIDGKKTAERSSSKGTTVRGRGRGRSWIRTLTITRRPPAMPLS 227



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.132    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,476,594
Number of extensions: 269286
Number of successful extensions: 654
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 653
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 130
Effective length of database: 11,971,043
Effective search space: 1556235590
Effective search space used: 1556235590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)