Os04g0690500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0690500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 228.52 | 0.71 | 3.69 | -1.71 | 0.108 | 1.27 | 0.575 | -3.13 | -0.474 | 2.41 | 24.81 | 874 | -- | -- |
| 231.39 | 0.708 | 3.62 | -1.11 | 0.16 | 1.01 | 0.498 | -- | -0.312 | 2.77 | 25 | 817 | -- | -- |
| 229.65 | 0.706 | 3.69 | -1.69 | 0.114 | 1.27 | -- | -2.94 | -0.465 | 3.01 | 24.91 | 873 | -- | -- |
| 232.2 | 0.71 | 3.62 | -1.13 | 0.15 | 0.999 | -- | -- | -0.318 | 2.59 | 25.01 | 830 | -- | -- |
| 230.24 | 0.707 | 3.69 | -1.7 | -- | 1.27 | -- | -2.89 | -0.462 | -- | 24.86 | 900 | -- | -- |
| 254.41 | 0.748 | 3.61 | -0.879 | 0.368 | -- | 0.321 | -- | -0.237 | 22.6 | -- | -- | -- | -- |
| 254.81 | 0.748 | 3.61 | -0.891 | 0.368 | -- | -- | -- | -0.238 | 22.4 | -- | -- | -- | -- |
| 233.15 | 0.711 | 3.62 | -1.13 | -- | 1.02 | -- | -- | -0.319 | -- | 24.9 | 873 | -- | -- |
| 263.93 | 0.757 | 3.59 | -- | 0.199 | 0.834 | -- | -- | -0.179 | 2.88 | 25.4 | 777 | -- | -- |
| 263.08 | 0.758 | 3.6 | -0.885 | -- | -- | -- | -- | -0.236 | -- | -- | -- | -- | -- |
| 275.73 | 0.777 | 3.59 | -- | 0.363 | -- | -- | -- | -0.138 | 22.2 | -- | -- | -- | -- |
| 265.11 | 0.758 | 3.59 | -- | -- | 0.785 | -- | -- | -0.169 | -- | 25.3 | 841 | -- | -- |
| 283.74 | 0.786 | 3.58 | -- | -- | -- | -- | -- | -0.138 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 224.60 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 4 | 224.98 | temperature | 25 | 720 | > th | dose dependent | sin | 16 | NA |
| 16 | 225.74 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 13 |
| 19 | 225.85 | temperature | 25 | 720 | > th | dose dependent | rect. | 12 | 12 |
| 25 | 225.91 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 16 |
| 42 | 226.07 | temperature | 25 | 720 | > th | dose dependent | rect. | 12 | 18 |
| 110 | 227.79 | radiation | 1 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 132 | 228.10 | radiation | 1 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 164 | 228.51 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 19 |
| 180 | 228.67 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 10 |
| 217 | 229.41 | temperature | 25 | 270 | > th | dose independent | rect. | 15 | 6 |
| 240 | 229.70 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 246 | 229.74 | temperature | 30 | 720 | < th | dose independent | rect. | 12 | 21 |
| 255 | 229.89 | temperature | 30 | 720 | < th | dose independent | rect. | 12 | 14 |
| 310 | 230.32 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 20 |
| 312 | 230.32 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 342 | 230.46 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 379 | 230.73 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 16 |
| 436 | 231.16 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 476 | 231.37 | temperature | 30 | 720 | < th | dose independent | rect. | 12 | 7 |
| 481 | 231.43 | temperature | 30 | 720 | < th | dose independent | sin | 14 | NA |
| 489 | 231.45 | temperature | 30 | 270 | < th | dose dependent | sin | 15 | NA |
| 515 | 231.66 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 12 |
| 553 | 231.89 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 555 | 231.90 | humidity | 70 | 720 | < th | dose independent | rect. | 16 | 16 |
| 575 | 232.03 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 578 | 232.04 | temperature | 30 | 720 | > th | dose independent | sin | 13 | NA |
| 579 | 232.04 | radiation | 1 | 720 | < th | dose independent | rect. | 6 | 18 |
| 583 | 232.05 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 589 | 232.07 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 592 | 232.08 | humidity | 80 | 720 | < th | dose dependent | sin | 12 | NA |
| 637 | 232.29 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 2 |
| 695 | 232.61 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 727 | 232.71 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 16 |
| 783 | 232.87 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 4 |
| 787 | 232.88 | humidity | 70 | 720 | < th | dose independent | rect. | 16 | 4 |
| 851 | 232.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 871 | 233.07 | radiation | 1 | 720 | < th | dose dependent | sin | 17 | NA |
| 873 | 233.08 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 899 | 233.19 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 8 |
| 911 | 233.22 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 11 |
| 930 | 233.25 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 17 |
| 962 | 233.37 | temperature | 25 | 720 | > th | dose independent | rect. | 19 | 1 |
| 982 | 233.44 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 1 |