BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0682500 Os04g0682500|AK121739
         (445 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0682500  Peptidase T2, asparaginase 2 family protein         766   0.0  

>Os04g0682500 Peptidase T2, asparaginase 2 family protein
          Length = 445

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/414 (91%), Positives = 377/414 (91%)

Query: 32  NQSPPNRRFFVAVHVGAGFHAPANEKAYXXXXXXXXXXXXXXXXEGNGTSLDAVAAAIQV 91
           NQSPPNRRFFVAVHVGAGFHAPANEKAY                EGNGTSLDAVAAAIQV
Sbjct: 32  NQSPPNRRFFVAVHVGAGFHAPANEKAYRRAMKRACLAAAAVLREGNGTSLDAVAAAIQV 91

Query: 92  LEDDPITNAGRGSNLTESGHVECDASIMDGSTTTFGAVGAVQGVKNPIQIALHLAREQMV 151
           LEDDPITNAGRGSNLTESGHVECDASIMDGSTTTFGAVGAVQGVKNPIQIALHLAREQMV
Sbjct: 92  LEDDPITNAGRGSNLTESGHVECDASIMDGSTTTFGAVGAVQGVKNPIQIALHLAREQMV 151

Query: 152 GPSLLGRIPPIFLVGEGACQWAKSKGLNLPEATSEGNSWLVTESAKAQWGKYRSLLASAK 211
           GPSLLGRIPPIFLVGEGACQWAKSKGLNLPEATSEGNSWLVTESAKAQWGKYRSLLASAK
Sbjct: 152 GPSLLGRIPPIFLVGEGACQWAKSKGLNLPEATSEGNSWLVTESAKAQWGKYRSLLASAK 211

Query: 212 ESVNHXXXXXXXXXXVQLEAPGAEAEDITGVKKMKMITRSIMEDDQDCVMDTVGAVCVDA 271
           ESVNH          VQLEAPGAEAEDITGVKKMKMITRSIMEDDQDCVMDTVGAVCVDA
Sbjct: 212 ESVNHSTGSGSESSSVQLEAPGAEAEDITGVKKMKMITRSIMEDDQDCVMDTVGAVCVDA 271

Query: 272 YGNXXXXXXXXXXXLKVDGRVGLAAMYGSGCWASSKGPFGTPFIVGCCATGAGEHLIRGF 331
           YGN           LKVDGRVGLAAMYGSGCWASSKGPFGTPFIVGCCATGAGEHLIRGF
Sbjct: 272 YGNIASGASSGGIALKVDGRVGLAAMYGSGCWASSKGPFGTPFIVGCCATGAGEHLIRGF 331

Query: 332 AARECCISSSLIQSGPASACTKVLRQAVQSSSEMSHDTGAGLLLIQADVLNRREVSALGA 391
           AARECCISSSLIQSGPASACTKVLRQAVQSSSEMSHDTGAGLLLIQADVLNRREVSALGA
Sbjct: 332 AARECCISSSLIQSGPASACTKVLRQAVQSSSEMSHDTGAGLLLIQADVLNRREVSALGA 391

Query: 392 AELVAAYSSPSFGVGYLGSYMNSPKVAMLRSSKAAPNTINHFATRVNFDAQSDQ 445
           AELVAAYSSPSFGVGYLGSYMNSPKVAMLRSSKAAPNTINHFATRVNFDAQSDQ
Sbjct: 392 AELVAAYSSPSFGVGYLGSYMNSPKVAMLRSSKAAPNTINHFATRVNFDAQSDQ 445



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.130    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,074,312
Number of extensions: 506410
Number of successful extensions: 1126
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1125
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 341
Effective length of database: 11,605,545
Effective search space: 3957490845
Effective search space used: 3957490845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)