FiT-DB / Search/ Help/ Sample detail

Os04g0682500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase T2, asparaginase 2 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.71 (0.0157) R2 : 0.737
β1 : -2.05 (0.0576) R2dD : 0.759 R2D : 0.661
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.334 (0.0336) R2dN8 : 0.0763 R2N8 : -0.0215
σ : 0.295
deviance : 39.9
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
27.51 0.246 9.75 -2.19 0.35 0.256 0.548 2.49 -0.379 23.2 19.89 419 -- --
28.47 0.249 9.73 -2.18 0.353 -0.921 0.394 -- -0.372 23.1 19.01 306 -- --
28.48 0.249 9.75 -2.2 0.347 0.183 -- 2.42 -0.376 22.7 19.93 350 -- --
29.01 0.251 9.73 -2.19 0.353 -0.898 -- -- -0.374 22.9 19.11 229 -- --
35.92 0.279 9.74 -2.23 -- 0.00359 -- 1.99 -0.374 -- 20.06 351 -- --
31.98 0.265 9.72 -2.04 0.341 -- 0.415 -- -0.335 23.2 -- -- -- --
32.65 0.268 9.72 -2.06 0.342 -- -- -- -0.336 22.8 -- -- -- --
36.21 0.28 9.72 -2.17 -- -0.922 -- -- -0.372 -- 18.82 369 -- --
134.92 0.541 9.64 -- 0.297 0.938 -- -- 0.00526 19 35.42 2 -- --
39.9 0.295 9.71 -2.05 -- -- -- -- -0.334 -- -- -- -- --
144.21 0.562 9.67 -- 0.329 -- -- -- -0.106 22.3 -- -- -- --
139.38 0.55 9.64 -- -- 0.867 -- -- -0.00701 -- 45.79 15 -- --
150.81 0.573 9.66 -- -- -- -- -- -0.106 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.30 temperature 15 1440 > th dose independent rect. 10 8
3 27.53 temperature 15 720 > th dose independent rect. 1 21
4 27.65 temperature 10 43200 > th dose independent rect. 9 9
12 27.88 radiation 30 4320 < th dose independent rect. 24 7
13 27.89 temperature 20 720 < th dose dependent rect. 6 20
17 27.94 temperature 15 720 > th dose independent sin 0 NA
19 27.95 temperature 15 270 > th dose independent sin 7 NA
21 27.97 temperature 15 270 > th dose independent sin 21 NA
22 27.97 temperature 15 270 > th dose independent rect. 6 23
24 27.98 temperature 15 720 > th dose independent rect. 10 18
26 27.99 temperature 15 720 > th dose independent sin 11 NA
28 27.99 temperature 20 270 < th dose dependent rect. 22 23
29 27.99 temperature 20 270 < th dose dependent rect. 24 23
39 28.02 radiation 20 4320 < th dose independent rect. 18 12
42 28.02 temperature 20 270 < th dose dependent rect. 20 22
46 28.03 temperature 20 270 < th dose dependent sin 8 NA
48 28.03 temperature 20 270 < th dose dependent rect. 14 21
50 28.03 temperature 20 270 < th dose dependent rect. 11 23
58 28.05 temperature 20 270 < th dose dependent no NA NA
64 28.06 temperature 15 270 > th dose independent rect. 10 16
97 28.11 humidity 80 14400 > th dose dependent rect. 5 1
98 28.11 temperature 20 270 < th dose dependent rect. 22 12
99 28.11 temperature 20 270 < th dose dependent rect. 21 14
106 28.12 temperature 20 1440 < th dose dependent rect. 6 8
114 28.13 temperature 15 720 > th dose independent sin 13 NA
122 28.14 atmosphere 1010 30 < th dose independent rect. 17 7
132 28.15 humidity 80 43200 > th dose independent rect. 1 14
133 28.15 humidity 80 43200 > th dose independent rect. 24 16
136 28.15 temperature 20 720 < th dose dependent rect. 6 14
138 28.15 humidity 60 43200 > th dose dependent rect. 23 18
144 28.16 atmosphere 1015 4320 < th dose independent rect. 16 2
147 28.16 humidity 60 43200 > th dose dependent rect. 24 16
159 28.18 temperature 15 720 > th dose independent rect. 19 16
160 28.18 humidity 80 43200 > th dose independent rect. 23 18
162 28.18 temperature 15 720 > th dose independent rect. 19 22
190 28.21 humidity 80 43200 > th dose independent rect. 2 12
215 28.24 wind 9 43200 < th dose independent rect. 23 5
216 28.24 radiation 20 270 < th dose independent rect. 13 9
219 28.24 temperature 20 720 < th dose dependent sin 23 NA
241 28.26 humidity 90 90 < th dose independent rect. 11 6
245 28.26 radiation 1 4320 < th dose dependent rect. 14 3
249 28.26 humidity 60 43200 > th dose dependent rect. 10 20
251 28.27 humidity 80 43200 > th dose independent sin 4 NA
263 28.28 humidity 90 720 > th dose dependent sin 22 NA
273 28.29 radiation 40 270 < th dose dependent rect. 13 9
279 28.30 humidity 90 14400 > th dose independent rect. 4 3
281 28.30 humidity 80 43200 < th dose independent rect. 24 16
282 28.30 temperature 15 720 > th dose independent rect. 19 20
284 28.30 humidity 50 14400 > th dose dependent rect. 5 1
305 28.32 temperature 20 720 > th dose independent rect. 5 14
310 28.32 humidity 80 43200 > th dose independent rect. 10 21
328 28.33 humidity 90 14400 < th dose independent rect. 5 2
332 28.33 temperature 15 1440 > th dose independent rect. 14 16
349 28.34 humidity 60 43200 > th dose dependent sin 5 NA
351 28.34 radiation 1 4320 < th dose dependent rect. 8 9
378 28.36 radiation 1 4320 < th dose dependent rect. 10 7
380 28.36 radiation 20 90 < th dose dependent rect. 13 10
391 28.37 temperature 15 1440 > th dose independent rect. 24 6
392 28.37 humidity 90 14400 > th dose independent rect. 3 6
402 28.37 humidity 70 43200 > th dose dependent rect. 15 20
408 28.38 temperature 20 90 > th dose independent rect. 17 6
415 28.38 humidity 80 43200 > th dose independent rect. 23 23
432 28.39 humidity 90 90 < th dose independent sin 22 NA
442 28.39 temperature 20 1440 < th dose dependent rect. 8 1
466 28.40 radiation 10 30 < th dose dependent sin 18 NA
492 28.41 temperature 20 43200 < th dose dependent rect. 8 1
493 28.41 temperature 20 43200 < th dose dependent rect. 17 4
529 28.42 temperature 15 270 > th dose independent rect. 14 23
530 28.42 humidity 80 43200 > th dose independent rect. 18 23
534 28.42 humidity 70 43200 > th dose dependent rect. 2 9
540 28.42 humidity 70 43200 > th dose dependent rect. 15 14
548 28.43 humidity 80 43200 > th dose independent no NA NA
550 28.43 temperature 15 4320 > th dose independent rect. 16 2
577 28.44 humidity 90 720 < th dose independent rect. 10 7
578 28.44 humidity 90 14400 > th dose independent rect. 2 8
584 28.44 temperature 15 720 > th dose independent rect. 21 22
585 28.44 humidity 80 43200 > th dose independent rect. 2 23
586 28.44 humidity 60 43200 > th dose dependent no NA NA
589 28.44 temperature 20 43200 < th dose dependent rect. 19 2
614 28.45 humidity 80 43200 < th dose independent rect. 10 21
619 28.45 temperature 20 4320 < th dose dependent rect. 15 4
643 28.46 temperature 15 43200 > th dose independent rect. 4 1
645 28.46 temperature 20 720 > th dose independent rect. 5 12
647 28.46 temperature 15 720 > th dose independent rect. 1 14
665 28.46 humidity 70 43200 > th dose dependent sin 14 NA
674 28.46 temperature 20 43200 < th dose dependent rect. 7 14
698 28.47 atmosphere 1015 720 < th dose independent rect. 1 12
724 28.47 temperature 10 720 > th dose dependent rect. 1 21
730 28.48 radiation 10 30 < th dose independent sin 16 NA
732 28.48 temperature 10 43200 > th dose independent rect. 12 8
737 28.48 humidity 90 720 < th dose independent rect. 6 16
775 28.49 humidity 80 43200 < th dose independent sin 4 NA
794 28.49 temperature 20 43200 < th dose dependent rect. 7 11
813 28.49 humidity 60 43200 > th dose dependent rect. 5 23
818 28.50 temperature 20 43200 > th dose independent rect. 12 1
819 28.50 humidity 90 720 < th dose independent rect. 9 4
820 28.50 humidity 50 43200 > th dose independent rect. 24 5
823 28.50 humidity 80 43200 < th dose independent rect. 2 12
825 28.50 temperature 15 1440 > th dose independent rect. 16 14
858 28.50 humidity 60 43200 > th dose dependent rect. 2 23
859 28.51 temperature 20 43200 < th dose independent rect. 12 1
862 28.51 temperature 15 1440 > th dose independent rect. 6 6
875 28.51 temperature 20 43200 < th dose dependent sin 21 NA
913 28.52 wind 7 43200 > th dose independent rect. 5 4
956 28.53 temperature 15 43200 < th dose independent rect. 4 1
963 28.53 radiation 20 270 < th dose independent rect. 13 20
970 28.53 temperature 20 1440 < th dose dependent rect. 11 1