BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0680400 Os04g0680400|AK067234
(244 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0680400 Similar to Allantoinase (EC 3.5.2.5) 466 e-132
>Os04g0680400 Similar to Allantoinase (EC 3.5.2.5)
Length = 244
Score = 466 bits (1199), Expect = e-132, Method: Compositional matrix adjust.
Identities = 228/244 (93%), Positives = 228/244 (93%)
Query: 1 MGGSSDQRSATCDERHGDXXXXXXXXXXXXXXXXCKTSLGLLKDAKQNGARVSVETCPHY 60
MGGSSDQRSATCDERHGD CKTSLGLLKDAKQNGARVSVETCPHY
Sbjct: 1 MGGSSDQRSATCDERHGDRGSVRRSSYSHSSSLRCKTSLGLLKDAKQNGARVSVETCPHY 60
Query: 61 LAFSAEEVPDGDTRFKCAPPIRDSTNRDNLWEALLDGHIDMLSSDHSPSAPDLKLMEEGN 120
LAFSAEEVPDGDTRFKCAPPIRDSTNRDNLWEALLDGHIDMLSSDHSPSAPDLKLMEEGN
Sbjct: 61 LAFSAEEVPDGDTRFKCAPPIRDSTNRDNLWEALLDGHIDMLSSDHSPSAPDLKLMEEGN 120
Query: 121 FLRAWGGISSLQFVLPVTWSHGKKYGISLNQLASWWSERPAMLAGLKKKGAVLPGYRADI 180
FLRAWGGISSLQFVLPVTWSHGKKYGISLNQLASWWSERPAMLAGLKKKGAVLPGYRADI
Sbjct: 121 FLRAWGGISSLQFVLPVTWSHGKKYGISLNQLASWWSERPAMLAGLKKKGAVLPGYRADI 180
Query: 181 VVWKPEAQFHLDDSHPVYHKHRNISAYLGKQLSGKILSTFVGGNLVFAEDKHAKAACGAP 240
VVWKPEAQFHLDDSHPVYHKHRNISAYLGKQLSGKILSTFVGGNLVFAEDKHAKAACGAP
Sbjct: 181 VVWKPEAQFHLDDSHPVYHKHRNISAYLGKQLSGKILSTFVGGNLVFAEDKHAKAACGAP 240
Query: 241 ILAK 244
ILAK
Sbjct: 241 ILAK 244
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,801,571
Number of extensions: 352330
Number of successful extensions: 735
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 735
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 146
Effective length of database: 11,918,829
Effective search space: 1740149034
Effective search space used: 1740149034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)