Os04g0680400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Allantoinase (EC 3.5.2.5).
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Os04g0680400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Allantoinase (EC 3.5.2.5).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 151.14 | 0.578 | 12.9 | -1.09 | 0.68 | 1.8 | -0.197 | -16.3 | 0.29 | 3.54 | 24.69 | 4577 | -- | -- |
| 223.41 | 0.701 | 12.4 | 2.79 | 1.1 | 1.64 | 0.032 | -- | 1.01 | 2.95 | 0.7127 | 40457 | -- | -- |
| 151.12 | 0.573 | 12.9 | -1.08 | 0.689 | 1.77 | -- | -16.1 | 0.278 | 3.46 | 24.57 | 4595 | -- | -- |
| 223.42 | 0.701 | 12.4 | 2.79 | 1.1 | 1.64 | -- | -- | 1.01 | 2.95 | 5.431 | 39894 | -- | -- |
| 173.18 | 0.613 | 12.8 | -0.626 | -- | 1.48 | -- | -12.6 | 0.22 | -- | 22.83 | 4355 | -- | -- |
| 249.11 | 0.74 | 12.3 | 3.11 | 0.649 | -- | -0.186 | -- | 1.24 | 3.37 | -- | -- | -- | -- |
| 249.22 | 0.739 | 12.3 | 3.11 | 0.648 | -- | -- | -- | 1.24 | 3.4 | -- | -- | -- | -- |
| 238.15 | 0.719 | 12.4 | 2.62 | -- | 1.29 | -- | -- | 0.991 | -- | 1.061 | 2621 | -- | -- |
| 272.24 | 0.768 | 12.6 | -- | 0.612 | 2.45 | -- | -- | 0.163 | 3.59 | -15.64 | 47520 | -- | -- |
| 272.84 | 0.772 | 12.3 | 3.14 | -- | -- | -- | -- | 1.26 | -- | -- | -- | -- | -- |
| 504.48 | 1.05 | 12.4 | -- | 0.71 | -- | -- | -- | 0.896 | 3.39 | -- | -- | -- | -- |
| 293.09 | 0.797 | 12.6 | -- | -- | 2.49 | -- | -- | 0.166 | -- | -17.08 | 47520 | -- | -- |
| 532.84 | 1.08 | 12.4 | -- | -- | -- | -- | -- | 0.911 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 133.48 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 15 | 134.86 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 45 | 136.70 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 47 | 137.76 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 49 | 138.04 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 52 | 139.13 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 65 | 139.13 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 8 | 2 |
| 81 | 139.44 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 7 | 4 |
| 85 | 140.18 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 86 | 140.18 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 88 | 140.75 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 103 | 141.19 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 7 | 7 |
| 104 | 141.20 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 109 | 141.42 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 110 | 141.43 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 117 | 141.44 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 123 | 141.44 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 140 | 141.66 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 168 | 142.13 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 193 | 142.27 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 196 | 142.29 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 210 | 142.30 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 216 | 142.47 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 237 | 142.71 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 238 | 142.71 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 256 | 142.88 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 261 | 142.97 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 267 | 143.09 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 292 | 143.36 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 296 | 143.40 | radiation | 20.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 300 | 143.46 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 306 | 143.69 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 315 | 143.86 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 22 | 16 |
| 319 | 143.87 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 327 | 143.88 | radiation | 10.0 | 43200 | > th | dose independent | sin | 10 | NA |
| 329 | 143.89 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 331 | 143.90 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 339 | 144.10 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 342 | 144.18 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 351 | 144.33 | wind | 7.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 385 | 144.67 | wind | 7.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 414 | 145.00 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 448 | 145.31 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 488 | 145.56 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 495 | 145.67 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 507 | 145.70 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 549 | 146.03 | wind | 7.0 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 572 | 146.15 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 575 | 146.18 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 10 |
| 601 | 146.42 | wind | 7.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 611 | 146.57 | radiation | 20.0 | 43200 | < th | dose dependent | sin | 6 | NA |
| 638 | 146.80 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 662 | 146.92 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 671 | 146.98 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 801 | 147.90 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 802 | 147.91 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 7 | 7 |
| 804 | 147.91 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 805 | 147.91 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 823 | 148.04 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 16 | 10 |
| 828 | 148.07 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 888 | 148.32 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 901 | 148.39 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 991 | 148.83 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 997 | 148.86 | wind | 9.0 | 43200 | < th | dose independent | rect. | 21 | 2 |