BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0669800 Os04g0669800|AK067649
(430 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0669800 Methylthioribose kinase (EC 2.7.1.100) 871 0.0
>Os04g0669800 Methylthioribose kinase (EC 2.7.1.100)
Length = 430
Score = 871 bits (2251), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/416 (100%), Positives = 416/416 (100%)
Query: 15 GFRPLDEASLVAYIKATPALAARLGGSLDALTIKEVGDGNLNFVYIVLSDAGSVVIKQAL 74
GFRPLDEASLVAYIKATPALAARLGGSLDALTIKEVGDGNLNFVYIVLSDAGSVVIKQAL
Sbjct: 15 GFRPLDEASLVAYIKATPALAARLGGSLDALTIKEVGDGNLNFVYIVLSDAGSVVIKQAL 74
Query: 75 PYIRCVGDSWPMTRERAYFEASALQKHRGLCPDHVPEVYHFDRAMSLIGMRYIEPPHIIL 134
PYIRCVGDSWPMTRERAYFEASALQKHRGLCPDHVPEVYHFDRAMSLIGMRYIEPPHIIL
Sbjct: 75 PYIRCVGDSWPMTRERAYFEASALQKHRGLCPDHVPEVYHFDRAMSLIGMRYIEPPHIIL 134
Query: 135 RKGLIAGVEYPLLAEHMADYMAKTLFFTSLLYNSTTDHKKGVAQYCDNVEMCRLTEQVVF 194
RKGLIAGVEYPLLAEHMADYMAKTLFFTSLLYNSTTDHKKGVAQYCDNVEMCRLTEQVVF
Sbjct: 135 RKGLIAGVEYPLLAEHMADYMAKTLFFTSLLYNSTTDHKKGVAQYCDNVEMCRLTEQVVF 194
Query: 195 SDPYMLAKYNRCTSPFLDNDAAAVREDAELKLEIAELKSMFIERAQALLHGDLHTGSIMV 254
SDPYMLAKYNRCTSPFLDNDAAAVREDAELKLEIAELKSMFIERAQALLHGDLHTGSIMV
Sbjct: 195 SDPYMLAKYNRCTSPFLDNDAAAVREDAELKLEIAELKSMFIERAQALLHGDLHTGSIMV 254
Query: 255 TPDSTQVIDPEFAFYGPMGYDIGAFLGNLILAYFSQDGHADQANDRKAYKKWILKTIEDS 314
TPDSTQVIDPEFAFYGPMGYDIGAFLGNLILAYFSQDGHADQANDRKAYKKWILKTIEDS
Sbjct: 255 TPDSTQVIDPEFAFYGPMGYDIGAFLGNLILAYFSQDGHADQANDRKAYKKWILKTIEDS 314
Query: 315 WNLFHKKFVELWNKHKDGNGEAYLPPIYNSSELLCLAQKKYMTSLFHDSLGFGSAKMIRR 374
WNLFHKKFVELWNKHKDGNGEAYLPPIYNSSELLCLAQKKYMTSLFHDSLGFGSAKMIRR
Sbjct: 315 WNLFHKKFVELWNKHKDGNGEAYLPPIYNSSELLCLAQKKYMTSLFHDSLGFGSAKMIRR 374
Query: 375 IVGIAHVEDFESIEDASKRASCERRALNCAKAILKGRRQFESIGQVIVHVQSFDRD 430
IVGIAHVEDFESIEDASKRASCERRALNCAKAILKGRRQFESIGQVIVHVQSFDRD
Sbjct: 375 IVGIAHVEDFESIEDASKRASCERRALNCAKAILKGRRQFESIGQVIVHVQSFDRD 430
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,116,402
Number of extensions: 575241
Number of successful extensions: 1403
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1403
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 326
Effective length of database: 11,605,545
Effective search space: 3783407670
Effective search space used: 3783407670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)