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Os04g0669800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Methylthioribose kinase (EC 2.7.1.100).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.4 (0.0197) R2 : 0.301
β1 : 0.952 (0.0722) R2dD : 0.276 R2D : 0.195
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.303 (0.0421) R2dN8 : 0.106 R2N8 : 0.025
σ : 0.37
deviance : 62.71
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
46.73 0.321 12.3 1.02 0.463 -0.4 -0.54 0.233 0.399 23.4 11.78 1282 -- --
46.83 0.319 12.4 0.996 0.461 -0.395 -0.483 -- 0.394 23.4 11.89 1281 -- --
47.91 0.322 12.4 1.03 0.468 -0.399 -- 0.0718 0.397 23.4 11.65 1281 -- --
47.91 0.322 12.4 1.01 0.469 -0.399 -- -- 0.392 23.4 11.28 1281 -- --
56.1 0.349 12.3 1.04 -- -0.504 -- 0.551 0.41 -- -4.151 1705 -- --
52.38 0.339 12.4 0.92 0.376 -- -0.563 -- 0.297 23.3 -- -- -- --
53.74 0.343 12.4 0.942 0.378 -- -- -- 0.299 23.4 -- -- -- --
56.47 0.35 12.3 0.994 -- -0.501 -- -- 0.395 -- -5.779 1718 -- --
64.5 0.374 12.4 -- 0.312 -0.538 -- -- 0.242 23.4 48.75 35082 -- --
62.71 0.37 12.4 0.952 -- -- -- -- 0.303 -- -- -- -- --
77.15 0.411 12.4 -- 0.388 -- -- -- 0.194 23.5 -- -- -- --
68.45 0.385 12.5 -- -- -0.691 -- -- 0.0503 -- 55.48 24918 -- --
86.63 0.434 12.4 -- -- -- -- -- 0.197 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 42.86 temperature 20.0 90 > th dose independent rect. 19 8
2 43.30 temperature 10.0 90 > th dose dependent rect. 19 8
8 44.35 temperature 20.0 90 > th dose independent rect. 21 6
11 44.43 temperature 20.0 90 > th dose independent rect. 21 16
18 44.68 temperature 20.0 90 > th dose independent rect. 19 19
19 44.69 temperature 20.0 270 > th dose independent rect. 19 16
23 44.75 temperature 20.0 10 > th dose independent rect. 21 17
25 44.85 temperature 20.0 10 > th dose independent rect. 21 7
35 45.05 temperature 20.0 90 > th dose independent rect. 7 20
38 45.09 precipitation 0.1 90 < th dose independent rect. 3 16
39 45.09 precipitation 0.1 90 < th dose dependent rect. 3 16
49 45.16 radiation 1.0 90 < th dose dependent rect. 5 22
51 45.17 wind 7.0 90 < th dose independent rect. 3 16
53 45.17 radiation 1.0 90 < th dose dependent rect. 7 20
55 45.18 wind 1.0 90 > th dose independent rect. 19 8
56 45.20 radiation 1.0 90 < th dose dependent rect. 11 16
61 45.21 temperature 10.0 270 > th dose dependent rect. 19 16
74 45.27 temperature 15.0 90 > th dose independent rect. 3 16
94 45.39 wind 7.0 90 < th dose independent rect. 19 8
99 45.42 temperature 10.0 90 > th dose independent rect. 19 8
100 45.42 temperature 30.0 90 < th dose independent rect. 19 8
101 45.42 humidity 50.0 90 > th dose independent rect. 19 8
103 45.42 atmosphere 995.0 90 > th dose independent rect. 19 8
104 45.42 radiation 1.0 90 < th dose independent rect. 19 8
110 45.42 atmosphere 1015.0 90 < th dose independent rect. 3 16
111 45.42 radiation 1.0 90 < th dose dependent rect. 19 8
129 45.52 wind 1.0 30 > th dose independent rect. 19 19
132 45.55 radiation 1.0 90 < th dose independent rect. 9 18
135 45.56 radiation 1.0 90 < th dose independent rect. 11 16
140 45.62 radiation 1.0 90 < th dose independent rect. 17 10
143 45.64 radiation 1.0 90 < th dose independent rect. 15 12
147 45.66 precipitation 0.1 90 < th dose independent rect. 19 8
149 45.66 temperature 15.0 10 > th dose dependent rect. 21 6
150 45.66 precipitation 0.1 90 < th dose dependent rect. 19 8
160 45.73 temperature 20.0 270 > th dose independent rect. 21 3
187 45.89 wind 1.0 30 > th dose independent rect. 21 17
192 45.92 humidity 50.0 1440 < th dose independent rect. 16 1
197 45.93 humidity 50.0 1440 < th dose dependent rect. 16 1
198 45.94 atmosphere 995.0 90 > th dose independent rect. 3 16
200 45.94 atmosphere 1015.0 90 < th dose dependent rect. 19 8
212 46.01 precipitation 0.1 270 < th dose independent rect. 1 16
214 46.01 humidity 50.0 90 > th dose dependent rect. 19 8
215 46.01 precipitation 0.1 270 < th dose dependent rect. 1 16
217 46.03 atmosphere 1015.0 90 < th dose independent rect. 19 8
219 46.05 wind 1.0 90 < th dose independent rect. 4 1
226 46.07 temperature 30.0 720 > th dose dependent rect. 18 1
270 46.17 wind 1.0 90 < th dose dependent rect. 4 1
271 46.19 wind 1.0 270 > th dose independent rect. 17 8
272 46.19 temperature 15.0 270 > th dose independent rect. 1 16
294 46.28 humidity 50.0 90 > th dose dependent rect. 17 10
298 46.29 radiation 30.0 270 < th dose dependent rect. 16 9
300 46.30 wind 7.0 270 < th dose independent rect. 17 8
310 46.32 wind 7.0 270 < th dose independent rect. 1 16
313 46.33 temperature 10.0 270 > th dose independent rect. 17 8
314 46.33 radiation 20.0 270 < th dose independent rect. 17 8
319 46.33 atmosphere 1015.0 270 < th dose independent rect. 1 16
366 46.42 temperature 15.0 270 > th dose independent rect. 13 16
368 46.42 wind 9.0 90 < th dose dependent rect. 3 16
373 46.43 precipitation 0.1 270 < th dose independent rect. 13 16
379 46.43 precipitation 0.1 270 < th dose dependent rect. 13 16
383 46.45 temperature 10.0 270 > th dose independent rect. 5 8
384 46.45 atmosphere 995.0 270 > th dose independent rect. 5 8
385 46.45 atmosphere 1015.0 270 < th dose independent rect. 5 8
393 46.47 precipitation 0.1 270 < th dose independent rect. 5 8
397 46.47 precipitation 0.1 270 < th dose dependent rect. 5 8
409 46.50 wind 9.0 270 < th dose independent rect. 5 8
412 46.50 wind 9.0 270 < th dose independent rect. 13 16
437 46.52 atmosphere 995.0 270 > th dose independent rect. 1 16
451 46.55 wind 1.0 30 > th dose independent rect. 21 15
469 46.60 wind 1.0 30 > th dose independent rect. 19 23
471 46.61 precipitation 0.1 270 < th dose independent rect. 17 8
476 46.61 precipitation 0.1 270 < th dose dependent rect. 17 8
478 46.62 atmosphere 995.0 270 > th dose independent rect. 17 8
532 46.71 wind 1.0 30 < th dose independent sin 6 NA
538 46.72 humidity 50.0 1440 > th dose independent rect. 16 1
546 46.72 humidity 80.0 720 < th dose dependent rect. 18 14
653 46.82 humidity 90.0 90 > th dose dependent rect. 4 1
666 46.84 wind 9.0 90 < th dose dependent rect. 19 8
724 46.89 temperature 15.0 10 > th dose dependent rect. 21 17
737 46.91 humidity 80.0 720 < th dose dependent rect. 18 9
739 46.92 wind 1.0 90 < th dose independent rect. 1 4
763 46.95 atmosphere 995.0 270 > th dose independent rect. 13 16
773 46.96 wind 1.0 270 > th dose independent rect. 4 9
785 46.97 atmosphere 1015.0 270 < th dose independent rect. 17 8
827 47.02 wind 1.0 10 > th dose independent rect. 19 10
837 47.04 temperature 25.0 270 < th dose independent rect. 1 4
891 47.06 humidity 80.0 720 < th dose dependent rect. 20 2
924 47.10 temperature 10.0 270 > th dose dependent rect. 6 5
934 47.12 temperature 10.0 43200 > th dose independent rect. 10 5
969 47.15 temperature 10.0 270 > th dose dependent rect. 5 7
975 47.16 wind 1.0 270 > th dose independent rect. 3 1
977 47.16 radiation 1.0 270 > th dose independent rect. 6 6