BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0669400 Os04g0669400|AK103305
         (172 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0669400  Conserved hypothetical protein                      131   2e-31

>Os04g0669400 Conserved hypothetical protein
          Length = 172

 Score =  131 bits (329), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/139 (51%), Positives = 72/139 (51%)

Query: 1   MKKLYQGKGRRVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTAEEQEVLAYLLSXXXX 60
           MKKLYQGKGRRVH                             LTAEEQEVLAYLLS    
Sbjct: 1   MKKLYQGKGRRVHPAPAQQAQADAAAAAAVVLPAAVLALASALTAEEQEVLAYLLSGGGA 60

Query: 61  XXXXXXXXXXHPPEMGCGCFGCYKSFWARWDASPNRHVIHRIIDXXXXXXXXXXXXXXXX 120
                     HPPEMGCGCFGCYKSFWARWDASPNRHVIHRIID                
Sbjct: 61  AGGRRRRRGAHPPEMGCGCFGCYKSFWARWDASPNRHVIHRIIDAAAAANAEAATARRMQ 120

Query: 121 XXXXXXXXAWNTTTTPVAS 139
                   AWNTTTTPVAS
Sbjct: 121 VPPRRRMPAWNTTTTPVAS 139



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.135    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,989,956
Number of extensions: 62324
Number of successful extensions: 91
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 78
Effective length of database: 12,127,685
Effective search space: 945959430
Effective search space used: 945959430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 152 (63.2 bits)