Os04g0669400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0669400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.62 | 0.292 | 11.6 | 0.686 | 0.683 | 1.25 | 0.0779 | 1.39 | 0.128 | 6.89 | 30.1 | 271 | -- | -- |
| 40.39 | 0.296 | 11.6 | 0.928 | 0.678 | 1.28 | 0.269 | -- | 0.164 | 6.69 | 31.25 | 312 | -- | -- |
| 38.63 | 0.289 | 11.6 | 0.681 | 0.683 | 1.25 | -- | 1.42 | 0.126 | 6.89 | 30.11 | 270 | -- | -- |
| 40.63 | 0.297 | 11.6 | 0.929 | 0.675 | 1.28 | -- | -- | 0.174 | 6.58 | 31.3 | 326 | -- | -- |
| 55.76 | 0.348 | 11.6 | 0.798 | -- | 1.89 | -- | 1.44 | 0.22 | -- | 31.65 | 372 | -- | -- |
| 59.84 | 0.363 | 11.6 | 0.615 | 1.03 | -- | 0.616 | -- | -0.0502 | 6 | -- | -- | -- | -- |
| 60.77 | 0.365 | 11.6 | 0.62 | 1.03 | -- | -- | -- | -0.0524 | 6.03 | -- | -- | -- | -- |
| 57.71 | 0.354 | 11.6 | 1.03 | -- | 1.87 | -- | -- | 0.247 | -- | 32.49 | 366 | -- | -- |
| 60.98 | 0.364 | 11.6 | -- | 0.784 | 0.922 | -- | -- | -0.00785 | 6.18 | 112 | 363 | -- | -- |
| 115.84 | 0.503 | 11.6 | 0.65 | -- | -- | -- | -- | -0.0291 | -- | -- | -- | -- | -- |
| 70.91 | 0.394 | 11.6 | -- | 1.04 | -- | -- | -- | -0.122 | 6 | -- | -- | -- | -- |
| 85.41 | 0.43 | 11.6 | -- | -- | 1.6 | -- | -- | 0.0838 | -- | 122.8 | 369 | -- | -- |
| 126.99 | 0.526 | 11.7 | -- | -- | -- | -- | -- | -0.101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 20 |
| 16 | 37.95 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 25 | 38.62 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 29 | 38.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 45 | 39.22 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 22 |
| 69 | 39.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 72 | 39.61 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 122 | 40.22 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 148 | 40.30 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 17 |
| 172 | 40.35 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 199 | 40.40 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 7 |
| 228 | 40.45 | temperature | 20 | 1440 | > th | dose dependent | sin | 9 | NA |
| 243 | 40.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 311 | 40.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 2 |
| 398 | 40.62 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
| 565 | 40.76 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 728 | 40.90 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 848 | 40.99 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 877 | 41.01 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 962 | 41.07 | temperature | 15 | 1440 | > th | dose dependent | no | NA | NA |