BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0667000 Os04g0667000|AK069874
         (157 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0667000  Tafazzin family protein                             238   2e-63
Os01g0931300  Tafazzin family protein                              92   1e-19

>Os04g0667000 Tafazzin family protein
          Length = 157

 Score =  238 bits (606), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 116/131 (88%), Positives = 116/131 (88%)

Query: 27  HLGGFPRXXXXXXXXXXXXXXXSLLNTTTVHNADALLRLVSSRPPGTPLLTVSNHMSTMD 86
           HLGGFPR               SLLNTTTVHNADALLRLVSSRPPGTPLLTVSNHMSTMD
Sbjct: 27  HLGGFPRAAVIAAVGAVAKAYASLLNTTTVHNADALLRLVSSRPPGTPLLTVSNHMSTMD 86

Query: 87  DPLMWGFKGFPTTDAKLQRWVLTAEDICFRNVFMSYIFRLGKCVPITRGAGIYQDHMTEA 146
           DPLMWGFKGFPTTDAKLQRWVLTAEDICFRNVFMSYIFRLGKCVPITRGAGIYQDHMTEA
Sbjct: 87  DPLMWGFKGFPTTDAKLQRWVLTAEDICFRNVFMSYIFRLGKCVPITRGAGIYQDHMTEA 146

Query: 147 LEVLSTGDWEK 157
           LEVLSTGDWEK
Sbjct: 147 LEVLSTGDWEK 157



>Os01g0931300 Tafazzin family protein
          Length = 507

 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 63/107 (58%), Gaps = 2/107 (1%)

Query: 51  LNTTTVHNADALLRLVSSRPPGTPLLTVSNHMSTMDDPLMWGFKGFPTT--DAKLQRWVL 108
           LN+  ++ A+ L + +  RP G PLLTVSNH++ MDDP +      P+   +A+  RW L
Sbjct: 134 LNSVQIYGAEKLQQALQERPKGKPLLTVSNHVAAMDDPFVIASILPPSVMLEAQKLRWTL 193

Query: 109 TAEDICFRNVFMSYIFRLGKCVPITRGAGIYQDHMTEALEVLSTGDW 155
            A D CF N  +S  FR  K +P++RG GIYQ  M  AL  L+ G W
Sbjct: 194 CASDRCFTNPILSTFFRSVKVLPVSRGDGIYQKGMDMALSKLNNGGW 240



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.137    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,247,892
Number of extensions: 149080
Number of successful extensions: 257
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 2
Length of query: 157
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 65
Effective length of database: 12,232,113
Effective search space: 795087345
Effective search space used: 795087345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)