BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0663700 Os04g0663700|AK068004
(536 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0663700 TLDc domain containing protein 920 0.0
>Os04g0663700 TLDc domain containing protein
Length = 536
Score = 920 bits (2379), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/536 (85%), Positives = 458/536 (85%)
Query: 1 MGASTSTSNPSLEAQEQETXXXXXXXXXXXXXXXXXXNGXXXXXXXXXXXXFRSDSPPVP 60
MGASTSTSNPSLEAQEQET NG FRSDSPPVP
Sbjct: 1 MGASTSTSNPSLEAQEQETLASASLALPLLRAAFSRSNGSLAEALSPPPAAFRSDSPPVP 60
Query: 61 PRFHDLVARLGPAIASLFFSDVGPAGDAAGWVGFLRGFNRCCARVPASQSLALLLRVYXX 120
PRFHDLVARLGPAIASLFFSDVGPAGDAAGWVGFLRGFNRCCARVPASQSLALLLRVY
Sbjct: 61 PRFHDLVARLGPAIASLFFSDVGPAGDAAGWVGFLRGFNRCCARVPASQSLALLLRVYAA 120
Query: 121 XXXXXXXXXXLQFHPDEDGAGGEGKVVGELAPGEIAVLLWMCWVMAWSXXXXXXXXXXXX 180
LQFHPDEDGAGGEGKVVGELAPGEIAVLLWMCWVMAWS
Sbjct: 121 ACADAGAPCGLQFHPDEDGAGGEGKVVGELAPGEIAVLLWMCWVMAWSGSAPGVSGGQEG 180
Query: 181 XXXXXXXLLPDVTHLXXXXXXXXXXXXXXXXXWGWEVSRGGKGVKVQEFTSWVLSTAAGL 240
LLPDVTHL WGWEVSRGGKGVKVQEFTSWVLSTAAGL
Sbjct: 181 GGKGEPVLLPDVTHLVLSALVSAGAVADDAGVWGWEVSRGGKGVKVQEFTSWVLSTAAGL 240
Query: 241 GNCLSRYVQERFRSCAADPVEERSVSTGNTSSCNPDVYLLTRGRAWAISLSLRNTLSEKF 300
GNCLSRYVQERFRSCAADPVEERSVSTGNTSSCNPDVYLLTRGRAWAISLSLRNTLSEKF
Sbjct: 241 GNCLSRYVQERFRSCAADPVEERSVSTGNTSSCNPDVYLLTRGRAWAISLSLRNTLSEKF 300
Query: 301 LSASVIGMDTEDLLYRSSVHGKGLSRFWSCVEGYKGPVLILLSAFSRSGGDNVDTDQRWG 360
LSASVIGMDTEDLLYRSSVHGKGLSRFWSCVEGYKGPVLILLSAFSRSGGDNVDTDQRWG
Sbjct: 301 LSASVIGMDTEDLLYRSSVHGKGLSRFWSCVEGYKGPVLILLSAFSRSGGDNVDTDQRWG 360
Query: 361 IGILTEEGLQNKDTFYGSSASLCSTYPIFRMLPPSGKEKNFIYCHLHPQIRVYEAKPKPV 420
IGILTEEGLQNKDTFYGSSASLCSTYPIFRMLPPSGKEKNFIYCHLHPQIRVYEAKPKPV
Sbjct: 361 IGILTEEGLQNKDTFYGSSASLCSTYPIFRMLPPSGKEKNFIYCHLHPQIRVYEAKPKPV 420
Query: 421 GLGFGGTIGNERIFLDEDFSKLTVRHHAVDKTYQHGSLIPNQGYLPVEASVLDVEVWGLG 480
GLGFGGTIGNERIFLDEDFSKLTVRHHAVDKTYQHGSLIPNQGYLPVEASVLDVEVWGLG
Sbjct: 421 GLGFGGTIGNERIFLDEDFSKLTVRHHAVDKTYQHGSLIPNQGYLPVEASVLDVEVWGLG 480
Query: 481 GEATRRQQDMYKKREDIFSEQRRKVDLKTFGNWEDSPEKMMMDMISDPNAVRREDR 536
GEATRRQQDMYKKREDIFSEQRRKVDLKTFGNWEDSPEKMMMDMISDPNAVRREDR
Sbjct: 481 GEATRRQQDMYKKREDIFSEQRRKVDLKTFGNWEDSPEKMMMDMISDPNAVRREDR 536
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,611,625
Number of extensions: 714047
Number of successful extensions: 1702
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1699
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 430
Effective length of database: 11,501,117
Effective search space: 4945480310
Effective search space used: 4945480310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)