Os04g0663700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TLDc domain containing protein.
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Os04g0663700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TLDc domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.3 | 0.359 | 7.78 | -0.258 | 0.492 | 1.08 | -0.124 | 0.792 | -0.118 | 10.4 | 25.4 | 314 | -- | -- |
| 59.08 | 0.358 | 7.76 | -0.122 | 0.506 | 1.02 | -0.139 | -- | -0.0907 | 10.5 | 25.7 | 277 | -- | -- |
| 58.35 | 0.356 | 7.78 | -0.261 | 0.494 | 1.09 | -- | 0.811 | -0.118 | 10.4 | 25.4 | 311 | -- | -- |
| 59.15 | 0.358 | 7.76 | -0.131 | 0.508 | 1.02 | -- | -- | -0.0854 | 10.5 | 25.75 | 277 | -- | -- |
| 67.6 | 0.383 | 7.78 | -0.201 | -- | 1.17 | -- | 0.633 | -0.0836 | -- | 27.6 | 620 | -- | -- |
| 74.31 | 0.404 | 7.81 | -0.387 | 0.532 | -- | -0.238 | -- | -0.305 | 9.15 | -- | -- | -- | -- |
| 74.5 | 0.404 | 7.81 | -0.395 | 0.532 | -- | -- | -- | -0.305 | 9.2 | -- | -- | -- | -- |
| 68.01 | 0.384 | 7.77 | -0.0814 | -- | 1.16 | -- | -- | -0.0608 | -- | 28.62 | 632 | -- | -- |
| 59.55 | 0.359 | 7.75 | -- | 0.509 | 1.08 | -- | -- | -0.0592 | 10.7 | 25.79 | 277 | -- | -- |
| 90.91 | 0.446 | 7.82 | -0.397 | -- | -- | -- | -- | -0.302 | -- | -- | -- | -- | -- |
| 78.62 | 0.415 | 7.8 | -- | 0.532 | -- | -- | -- | -0.261 | 9.26 | -- | -- | -- | -- |
| 68.17 | 0.385 | 7.76 | -- | -- | 1.19 | -- | -- | -0.0457 | -- | 28.54 | 632 | -- | -- |
| 95.07 | 0.455 | 7.81 | -- | -- | -- | -- | -- | -0.258 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.82 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 21 |
| 2 | 55.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 20 |
| 9 | 55.94 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 19 |
| 10 | 55.94 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 38 | 57.32 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 98 | 58.28 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 17 |
| 102 | 58.33 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 103 | 58.34 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 109 | 58.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 19 |
| 111 | 58.39 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 20 |
| 115 | 58.41 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 117 | 58.41 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 120 | 58.46 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 242 | 59.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 22 |
| 250 | 59.30 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 259 | 59.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 262 | 59.33 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 381 | 59.84 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 384 | 59.85 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 453 | 60.10 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 509 | 60.28 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 541 | 60.33 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 17 |
| 651 | 60.63 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 7 |
| 662 | 60.66 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 5 | 20 |
| 694 | 60.75 | temperature | 25 | 90 | < th | dose dependent | rect. | 9 | 16 |
| 755 | 60.89 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 17 |
| 874 | 61.08 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 892 | 61.12 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 900 | 61.12 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 4 | 20 |
| 925 | 61.16 | temperature | 25 | 720 | < th | dose dependent | sin | 16 | NA |
| 998 | 61.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 6 |