BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0661600 Os04g0661600|AK070456
(468 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0661600 Similar to Molybdopterin biosynthesis CNX1 pro... 934 0.0
>Os04g0661600 Similar to Molybdopterin biosynthesis CNX1 protein (Molybdenum
cofactor biosynthesis enzyme CNX1)
Length = 468
Score = 934 bits (2414), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/468 (98%), Positives = 459/468 (98%)
Query: 1 WSQPQHLSVVIRDSNRAMLIAAAIQHKCKVVDLGIAKDTEESLKEHMDAALSSDADIILT 60
WSQPQHLSVVIRDSNRAMLIAAAIQHKCKVVDLGIAKDTEESLKEHMDAALSSDADIILT
Sbjct: 1 WSQPQHLSVVIRDSNRAMLIAAAIQHKCKVVDLGIAKDTEESLKEHMDAALSSDADIILT 60
Query: 61 SGGVSMGDRDLVKPCLASMGKIHFEKIRMKPGKPLTFAEIVTEDSSKPSKKVLAFGLPGN 120
SGGVSMGDRDLVKPCLASMGKIHFEKIRMKPGKPLTFAEIVTEDSSKPSKKVLAFGLPGN
Sbjct: 61 SGGVSMGDRDLVKPCLASMGKIHFEKIRMKPGKPLTFAEIVTEDSSKPSKKVLAFGLPGN 120
Query: 121 PVSCVVCFNLFVVPAIRSLSGWSNPHLPRVHARLLHPLRGDPHRQEFHRAVIRWVPDDGS 180
PVSCVVCFNLFVVPAIRSLSGWSNPHLPRVHARLLHPLRGDPHRQEFHRAVIRWVPDDGS
Sbjct: 121 PVSCVVCFNLFVVPAIRSLSGWSNPHLPRVHARLLHPLRGDPHRQEFHRAVIRWVPDDGS 180
Query: 181 GRPGYVAESTGQQASSRLLSMKSANALLEVPLVGQMLEAGTSMQAILISDMTSSPFDKLP 240
GRPGYVAESTGQQASSRLLSMKSANALLEVPLVGQMLEAGTSMQAILISDMTSSPFDKLP
Sbjct: 181 GRPGYVAESTGQQASSRLLSMKSANALLEVPLVGQMLEAGTSMQAILISDMTSSPFDKLP 240
Query: 241 TASNPLPSHLFPSAKSVSTDLSQVPASQNTEVKVAILTVSDTVSLGAGPDRSGPRAISVV 300
TASNPLPSHLFPSAKSVSTDLSQVPASQNTEVKVAILTVSDTVSLGAGPDRSGPRAISVV
Sbjct: 241 TASNPLPSHLFPSAKSVSTDLSQVPASQNTEVKVAILTVSDTVSLGAGPDRSGPRAISVV 300
Query: 301 NSSSEKLGGXXXXXXXXXPDDVEKIKNILVKWSDIDRVSLILTLGGTGFTPRDVTPEATK 360
NSSSEKLGG PDDVEKIKNILVKWSDIDRVSLILTLGGTGFTPRDVTPEATK
Sbjct: 301 NSSSEKLGGATVVATAVVPDDVEKIKNILVKWSDIDRVSLILTLGGTGFTPRDVTPEATK 360
Query: 361 SVIEKEAPGLTYVMLQESLKVTPFAMLSRATAGIRGSTLIINMPGNPNAVAECMEALLPA 420
SVIEKEAPGLTYVMLQESLKVTPFAMLSRATAGIRGSTLIINMPGNPNAVAECMEALLPA
Sbjct: 361 SVIEKEAPGLTYVMLQESLKVTPFAMLSRATAGIRGSTLIINMPGNPNAVAECMEALLPA 420
Query: 421 LKHALKQIKGDKREKHPRHVPHAEAAPVDQWDRSFRAASSGRGCSCEP 468
LKHALKQIKGDKREKHPRHVPHAEAAPVDQWDRSFRAASSGRGCSCEP
Sbjct: 421 LKHALKQIKGDKREKHPRHVPHAEAAPVDQWDRSFRAASSGRGCSCEP 468
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.131 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,207,409
Number of extensions: 685179
Number of successful extensions: 1934
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1934
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 364
Effective length of database: 11,605,545
Effective search space: 4224418380
Effective search space used: 4224418380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)