BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0650500 Os04g0650500|AK066690
         (293 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0650500  Conserved hypothetical protein                      520   e-148

>Os04g0650500 Conserved hypothetical protein
          Length = 293

 Score =  520 bits (1338), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 263/293 (89%), Positives = 263/293 (89%)

Query: 1   MEMTRSLTLVPLPATLRPASAACXXXXXXXGLPFGALFXXXXXXXXXXXEMHIRALQPRQ 60
           MEMTRSLTLVPLPATLRPASAAC       GLPFGALF           EMHIRALQPRQ
Sbjct: 1   MEMTRSLTLVPLPATLRPASAACRRRRRRRGLPFGALFSPSPPSNQQQQEMHIRALQPRQ 60

Query: 61  DWVGEWVRSNDTLVRGLPIXXXXXXXXXXXXNRAVSGIAAVADASSSQSRADILTLALSV 120
           DWVGEWVRSNDTLVRGLPI            NRAVSGIAAVADASSSQSRADILTLALSV
Sbjct: 61  DWVGEWVRSNDTLVRGLPILGGGASLLAVLLNRAVSGIAAVADASSSQSRADILTLALSV 120

Query: 121 TDILAGLVWLSIRPKSISPVVPRGVECKRVGTGVLDSALRELLWTWDSLTTATCCKSLVV 180
           TDILAGLVWLSIRPKSISPVVPRGVECKRVGTGVLDSALRELLWTWDSLTTATCCKSLVV
Sbjct: 121 TDILAGLVWLSIRPKSISPVVPRGVECKRVGTGVLDSALRELLWTWDSLTTATCCKSLVV 180

Query: 181 VYGGNCVLQIGVAAGSPEDGNAVMVDAQKFMQGSLYRSAMESKKQSYLANLALYPGRTEL 240
           VYGGNCVLQIGVAAGSPEDGNAVMVDAQKFMQGSLYRSAMESKKQSYLANLALYPGRTEL
Sbjct: 181 VYGGNCVLQIGVAAGSPEDGNAVMVDAQKFMQGSLYRSAMESKKQSYLANLALYPGRTEL 240

Query: 241 PFLPANTQALILQPIGDKGIAVIGGDTIRGFTNLDQAWIAMIADKLDATLSKS 293
           PFLPANTQALILQPIGDKGIAVIGGDTIRGFTNLDQAWIAMIADKLDATLSKS
Sbjct: 241 PFLPANTQALILQPIGDKGIAVIGGDTIRGFTNLDQAWIAMIADKLDATLSKS 293



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,682,700
Number of extensions: 320482
Number of successful extensions: 605
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 605
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 193
Effective length of database: 11,814,401
Effective search space: 2280179393
Effective search space used: 2280179393
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)