Os04g0650500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0650500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.07 | 0.294 | 11.6 | -1.69 | 1.01 | 1.43 | -0.415 | -0.177 | -0.684 | 23 | 20.6 | 245 | -- | -- |
| 39.09 | 0.291 | 11.6 | -1.66 | 1.02 | 1.42 | -0.398 | -- | -0.673 | 23.1 | 20.62 | 234 | -- | -- |
| 39.72 | 0.294 | 11.6 | -1.63 | 1.04 | 1.43 | -- | 0.0937 | -0.67 | 23.1 | 20.6 | 218 | -- | -- |
| 39.73 | 0.294 | 11.6 | -1.64 | 1.04 | 1.43 | -- | -- | -0.674 | 23.1 | 20.64 | 218 | -- | -- |
| 69.87 | 0.389 | 11.5 | -1.83 | -- | 1.96 | -- | 0.045 | -0.76 | -- | 16.74 | 699 | -- | -- |
| 74.12 | 0.404 | 11.5 | -1.34 | 1.09 | -- | -0.466 | -- | -0.431 | 21 | -- | -- | -- | -- |
| 74.88 | 0.405 | 11.5 | -1.32 | 1.09 | -- | -- | -- | -0.431 | 21 | -- | -- | -- | -- |
| 69.87 | 0.389 | 11.5 | -1.84 | -- | 1.95 | -- | -- | -0.762 | -- | 16.78 | 695 | -- | -- |
| 105.41 | 0.478 | 11.5 | -- | 0.989 | 0.904 | -- | -- | -0.41 | 22.2 | 21.9 | 243 | -- | -- |
| 143.05 | 0.559 | 11.5 | -1.32 | -- | -- | -- | -- | -0.437 | -- | -- | -- | -- | -- |
| 120.95 | 0.514 | 11.5 | -- | 1.09 | -- | -- | -- | -0.283 | 20.9 | -- | -- | -- | -- |
| 143.34 | 0.558 | 11.5 | -- | -- | 1.24 | -- | -- | -0.416 | -- | 23.58 | 673 | -- | -- |
| 189.03 | 0.642 | 11.4 | -- | -- | -- | -- | -- | -0.291 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.45 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 22 |
| 3 | 37.96 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 12 | 38.31 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 20 |
| 13 | 38.39 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 39 | 39.29 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 52 | 39.82 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 53 | 39.86 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 55 | 39.87 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 79 | 40.41 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 160 | 41.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 177 | 41.94 | temperature | 30 | 270 | < th | dose dependent | sin | 22 | NA |
| 262 | 42.92 | temperature | 25 | 270 | < th | dose independent | rect. | 5 | 18 |
| 288 | 43.04 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 20 |
| 342 | 43.24 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 348 | 43.28 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 21 |
| 506 | 43.78 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 3 |
| 527 | 43.84 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 532 | 43.86 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 579 | 44.03 | temperature | 20 | 270 | > th | dose dependent | sin | 0 | NA |
| 599 | 44.08 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 601 | 44.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 16 |
| 622 | 44.14 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 14 |
| 625 | 44.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 18 |
| 674 | 44.25 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 14 |
| 676 | 44.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 15 |
| 726 | 44.33 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 782 | 44.40 | temperature | 20 | 1440 | > th | dose dependent | sin | 1 | NA |
| 804 | 44.42 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 4 |
| 812 | 44.43 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 2 |