BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0648500 Os04g0648500|AK071891
         (544 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0648500  BRCA1-associated 2 domain containing protein        992   0.0  
Os02g0182900  Similar to BRCA1-associated protein (EC 6.3.2....   291   8e-79

>Os04g0648500 BRCA1-associated 2 domain containing protein
          Length = 544

 Score =  992 bits (2565), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/527 (91%), Positives = 483/527 (91%)

Query: 1   MFSLLIQSVDFTDDXXXXXXXXXXXGETSGTSHPLSPRSGDPLPTTTSASVTAPLELPGA 60
           MFSLLIQSVDFTDD           GETSGTSHPLSPRSGDPLPTTTSASVTAPLELPGA
Sbjct: 1   MFSLLIQSVDFTDDAAAAAATAVAAGETSGTSHPLSPRSGDPLPTTTSASVTAPLELPGA 60

Query: 61  TSASPARNPKINYTRGILHLYRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDCLLP 120
           TSASPARNPKINYTRGILHLYR                                 DCLLP
Sbjct: 61  TSASPARNPKINYTRGILHLYRSSSSSSSTASYASAVAATPSSSSSGPAAPQLASDCLLP 120

Query: 121 PWRGTRLLVLAVPTHVSPDDFVRFCGPYIEHASDIHVVRDDGVEDRYSVLVEFEDQKSAD 180
           PWRGTRLLVLAVPTHVSPDDFVRFCGPYIEHASDIHVVRDDGVEDRYSVLVEFEDQKSAD
Sbjct: 121 PWRGTRLLVLAVPTHVSPDDFVRFCGPYIEHASDIHVVRDDGVEDRYSVLVEFEDQKSAD 180

Query: 181 GFYLDLNGWRFSSSEVEVCHVLFIVAVQYTPSTKPAVTPPVGSTELPTCPVCIERLDQDI 240
           GFYLDLNGWRFSSSEVEVCHVLFIVAVQYTPSTKPAVTPPVGSTELPTCPVCIERLDQDI
Sbjct: 181 GFYLDLNGWRFSSSEVEVCHVLFIVAVQYTPSTKPAVTPPVGSTELPTCPVCIERLDQDI 240

Query: 241 SGIMATTCDHSFQCSCVSMWVNSSCPVCQFCQKQSKNPTCSVCQTSGNLWICIICGFVGC 300
           SGIMATTCDHSFQCSCVSMWVNSSCPVCQFCQKQSKNPTCSVCQTSGNLWICIICGFVGC
Sbjct: 241 SGIMATTCDHSFQCSCVSMWVNSSCPVCQFCQKQSKNPTCSVCQTSGNLWICIICGFVGC 300

Query: 301 GRYEEGHAIRHWKETQHCYSLDLETQRVWDYVGDSYVHRLNHSKSDVKHSKFKSKCKYSG 360
           GRYEEGHAIRHWKETQHCYSLDLETQRVWDYVGDSYVHRLNHSKSDVKHSKFKSKCKYSG
Sbjct: 301 GRYEEGHAIRHWKETQHCYSLDLETQRVWDYVGDSYVHRLNHSKSDVKHSKFKSKCKYSG 360

Query: 361 DKCANCSCNDEEDIGGAIFSSKAETIVDEYNRLLASQLETQREYYEARLSEAKKEKEQHI 420
           DKCANCSCNDEEDIGGAIFSSKAETIVDEYNRLLASQLETQREYYEARLSEAKKEKEQHI
Sbjct: 361 DKCANCSCNDEEDIGGAIFSSKAETIVDEYNRLLASQLETQREYYEARLSEAKKEKEQHI 420

Query: 421 SDAVDKAVNDKSKEIQQKIENAMLEKKKLADMNEKLTKNQDIWRRTLKEIEERERAQLKL 480
           SDAVDKAVNDKSKEIQQKIENAMLEKKKLADMNEKLTKNQDIWRRTLKEIEERERAQLKL
Sbjct: 421 SDAVDKAVNDKSKEIQQKIENAMLEKKKLADMNEKLTKNQDIWRRTLKEIEERERAQLKL 480

Query: 481 KDDTIRDLEEQIKDFKFSIKLQKSIEKNKNADDLKGGLLVPLPMVPD 527
           KDDTIRDLEEQIKDFKFSIKLQKSIEKNKNADDLKGGLLVPLPMVPD
Sbjct: 481 KDDTIRDLEEQIKDFKFSIKLQKSIEKNKNADDLKGGLLVPLPMVPD 527



>Os02g0182900 Similar to BRCA1-associated protein (EC 6.3.2.-) (BRAP2) (Impedes
           mitogenic signal propagation) (IMP). Splice isoform 3
          Length = 322

 Score =  291 bits (745), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 139/270 (51%), Positives = 180/270 (66%), Gaps = 1/270 (0%)

Query: 118 LLPPWRGTRLLVLAVPTHVSPDDFVRFCGPYIEHASDIHVVRDDGVEDRYSVLVEFEDQK 177
           LLP  R  R+ V  VP H++  DF RFC  +  H  +  ++R DGVED+Y VL++F+ Q 
Sbjct: 53  LLPVGRKPRVCVPGVPNHLTYADFGRFCASWASHILETRIIRIDGVEDQYGVLIKFDTQS 112

Query: 178 SADGFYLDLNGWRFSSSEVEVCHVLFIVAVQYTPSTKPAVTPPVGSTELPTCPVCIERLD 237
             D FY+  NG RFSS E  VC V F+  V YT   + A +    S E PTCPVC+ERLD
Sbjct: 113 FTDSFYMSFNGNRFSSLEGNVCRVRFVEDVHYTQLIEHAHSSVTSSAEQPTCPVCLERLD 172

Query: 238 QDISGIMATTCDHSFQCSCVSMWVNSSCPVCQFCQKQSKNPTCSVCQTSGNLWICIICGF 297
           QD  GI+ T C+HSF  SC+S W +SSCPVC++CQ++ +  +CSVC TS NLWIC+ICG 
Sbjct: 173 QDPGGILTTICNHSFHYSCMSKWADSSCPVCRYCQQEPEKSSCSVCGTSENLWICVICGH 232

Query: 298 VGCGRYEEGHAIRHWKETQHCYSLDLETQRVWDYVGDSYVHRLNHSKSDVKHSKFKSKCK 357
           VGCGRY+ GHAI HWKETQHCYSL+LETQ+VWDY GD+YVHRL  SK+D    ++     
Sbjct: 233 VGCGRYKGGHAIEHWKETQHCYSLELETQKVWDYAGDNYVHRLIQSKTDGNLVEYNFYGD 292

Query: 358 YSGDKCANCSCNDEEDIGGAIFSSKAETIV 387
           +S D   + +CN +  I  A+  SK E ++
Sbjct: 293 HSVDGMCS-TCNGDAGISEALLDSKMEAVM 321



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.133    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,426,838
Number of extensions: 731782
Number of successful extensions: 3820
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 3818
Number of HSP's successfully gapped: 2
Length of query: 544
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 438
Effective length of database: 11,501,117
Effective search space: 5037489246
Effective search space used: 5037489246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)