Os04g0648500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : BRCA1-associated 2 domain containing protein.
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Os04g0648500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : BRCA1-associated 2 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 103.9 | 0.479 | 7.65 | -0.214 | 0.651 | -5.14 | 0.225 | -9.23 | -0.16 | 10.5 | 9.098 | 31 | -- | -- |
| 104.88 | 0.477 | 7.67 | -0.158 | 0.654 | -3.06 | 0.14 | -- | -0.164 | 10.5 | 9.078 | 31 | -- | -- |
| 104.07 | 0.475 | 7.65 | -0.207 | 0.652 | -5.12 | -- | -9.3 | -0.163 | 10.4 | 9.169 | 31 | -- | -- |
| 104.96 | 0.477 | 7.67 | -0.149 | 0.65 | -3.01 | -- | -- | -0.168 | 10.4 | 9.1 | 31 | -- | -- |
| 129.38 | 0.53 | 7.66 | -0.245 | -- | -5.96 | -- | -13.2 | -0.178 | -- | 9.3 | 31 | -- | -- |
| 129.17 | 0.533 | 7.66 | -0.0148 | 0.634 | -- | 0.152 | -- | -0.112 | 9.96 | -- | -- | -- | -- |
| 129.26 | 0.532 | 7.66 | -0.00935 | 0.634 | -- | -- | -- | -0.112 | 9.9 | -- | -- | -- | -- |
| 130.55 | 0.532 | 7.68 | -0.125 | -- | -2.93 | -- | -- | -0.146 | -- | 9.3 | 31 | -- | -- |
| 105.52 | 0.478 | 7.67 | -- | 0.653 | -2.93 | -- | -- | -0.149 | 10.4 | 9.123 | 31 | -- | -- |
| 153.38 | 0.579 | 7.67 | -0.0164 | -- | -- | -- | -- | -0.112 | -- | -- | -- | -- | -- |
| 129.26 | 0.532 | 7.66 | -- | 0.634 | -- | -- | -- | -0.111 | 9.9 | -- | -- | -- | -- |
| 131.01 | 0.533 | 7.68 | -- | -- | -2.86 | -- | -- | -0.146 | -- | 9.285 | 31 | -- | -- |
| 153.39 | 0.578 | 7.67 | -- | -- | -- | -- | -- | -0.11 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 97.64 | wind | 9 | 30 | > th | dose dependent | rect. | 17 | 21 |
| 9 | 102.67 | wind | 9 | 30 | > th | dose independent | rect. | 17 | 21 |
| 13 | 104.99 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 27 | 105.13 | wind | 9 | 30 | > th | dose dependent | rect. | 11 | 9 |
| 32 | 105.27 | wind | 9 | 30 | > th | dose dependent | sin | 0 | NA |
| 141 | 105.94 | wind | 9 | 30 | > th | dose dependent | rect. | 17 | 19 |
| 146 | 106.00 | wind | 9 | 30 | > th | dose independent | rect. | 11 | 7 |
| 147 | 106.00 | wind | 9 | 30 | > th | dose independent | rect. | 11 | 9 |
| 149 | 106.01 | wind | 9 | 30 | > th | dose dependent | no | NA | NA |
| 190 | 106.01 | wind | 9 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 215 | 106.17 | wind | 9 | 90 | > th | dose dependent | rect. | 11 | 3 |
| 448 | 107.32 | wind | 9 | 30 | > th | dose independent | sin | 22 | NA |
| 453 | 107.55 | wind | 9 | 30 | < th | dose independent | no | NA | NA |
| 475 | 107.90 | wind | 9 | 30 | < th | dose independent | sin | 1 | NA |
| 521 | 108.41 | wind | 9 | 30 | > th | dose independent | no | NA | NA |
| 562 | 108.41 | wind | 9 | 30 | > th | dose independent | rect. | 13 | 23 |
| 569 | 108.43 | wind | 9 | 30 | > th | dose independent | rect. | 19 | 23 |
| 583 | 108.60 | wind | 9 | 90 | > th | dose independent | rect. | 11 | 3 |
| 594 | 109.16 | wind | 9 | 10 | > th | dose dependent | sin | 9 | NA |
| 597 | 109.22 | wind | 9 | 270 | > th | dose dependent | rect. | 11 | 1 |
| 618 | 109.61 | radiation | 30 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 619 | 109.61 | wind | 9 | 270 | > th | dose dependent | rect. | 17 | 19 |
| 709 | 110.36 | wind | 9 | 10 | > th | dose dependent | rect. | 13 | 5 |
| 730 | 110.48 | wind | 9 | 270 | > th | dose dependent | sin | 9 | NA |
| 731 | 110.50 | wind | 9 | 10 | > th | dose independent | rect. | 13 | 5 |
| 738 | 110.67 | wind | 9 | 270 | < th | dose independent | sin | 8 | NA |
| 747 | 111.00 | wind | 9 | 30 | > th | dose independent | rect. | 17 | 19 |
| 763 | 111.23 | wind | 9 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 772 | 111.35 | wind | 9 | 720 | > th | dose dependent | rect. | 22 | 15 |
| 773 | 111.37 | wind | 9 | 720 | > th | dose independent | rect. | 11 | 2 |
| 774 | 111.37 | wind | 9 | 720 | < th | dose independent | rect. | 23 | 16 |
| 838 | 111.44 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 943 | 111.66 | wind | 9 | 720 | > th | dose dependent | rect. | 9 | 4 |