BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0639200 Os04g0639200|AK070786
         (194 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0639200  Conserved hypothetical protein                      219   8e-58

>Os04g0639200 Conserved hypothetical protein
          Length = 194

 Score =  219 bits (559), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 119/194 (61%), Positives = 119/194 (61%)

Query: 1   MXXXXXXIICEMXXXXXXXXXXXXXXXXXXXXXXDGGKIMLQPRLCTLRSYXXXXXXXXX 60
           M      IICEM                      DGGKIMLQPRLCTLRSY         
Sbjct: 1   MAAAARAIICEMAPQRGAVVAPAAPAQQKATTRRDGGKIMLQPRLCTLRSYGAGSGVVAR 60

Query: 61  XXXXXXXXXXXXXXXXXPFFASLADYIESTRKSQDFETISGRLAMVAFATAVAVELTTGN 120
                            PFFASLADYIESTRKSQDFETISGRLAMVAFATAVAVELTTGN
Sbjct: 61  RRVVEEEESGGGGAGSSPFFASLADYIESTRKSQDFETISGRLAMVAFATAVAVELTTGN 120

Query: 121 SLFKKLDMQEIEEXXXXXXXXXXXXXXXXXXXXXRTRIGQMFTLGCSAFVDSLIDNIVEA 180
           SLFKKLDMQEIEE                     RTRIGQMFTLGCSAFVDSLIDNIVEA
Sbjct: 121 SLFKKLDMQEIEEAAGVCLAVVAGAAAFAWVSSARTRIGQMFTLGCSAFVDSLIDNIVEA 180

Query: 181 LFSEGELQDWSDDV 194
           LFSEGELQDWSDDV
Sbjct: 181 LFSEGELQDWSDDV 194



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,260,568
Number of extensions: 61464
Number of successful extensions: 125
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 99
Effective length of database: 12,075,471
Effective search space: 1195471629
Effective search space used: 1195471629
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 153 (63.5 bits)