BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0629600 Os04g0629600|AK070709
(323 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0629600 Similar to Transposase of Tn10 [Oryza sativa (... 675 0.0
Os05g0240500 172 2e-43
Os06g0498200 134 9e-32
Os01g0807300 133 1e-31
Os08g0339300 132 5e-31
Os07g0417700 RNA-directed DNA polymerase (Reverse transcrip... 130 2e-30
Os11g0493500 122 5e-28
Os03g0375550 115 4e-26
Os04g0269000 95 6e-20
>Os04g0629600 Similar to Transposase of Tn10 [Oryza sativa (japonica
cultivar-group)]
Length = 323
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/323 (100%), Positives = 323/323 (100%)
Query: 1 MLMLGGASHYAQLMDLQERSCQHITDKQIQGGYSLMGCIKDIPTLKGDNYAEWKRKLDLA 60
MLMLGGASHYAQLMDLQERSCQHITDKQIQGGYSLMGCIKDIPTLKGDNYAEWKRKLDLA
Sbjct: 1 MLMLGGASHYAQLMDLQERSCQHITDKQIQGGYSLMGCIKDIPTLKGDNYAEWKRKLDLA 60
Query: 61 FILGEVDWVLTTPCPIEPADLVRGENESDADWQKRQRDNAPLVMSYDIEQKKWSLANKKC 120
FILGEVDWVLTTPCPIEPADLVRGENESDADWQKRQRDNAPLVMSYDIEQKKWSLANKKC
Sbjct: 61 FILGEVDWVLTTPCPIEPADLVRGENESDADWQKRQRDNAPLVMSYDIEQKKWSLANKKC 120
Query: 121 LAVVKNTIEPTILGSIPECDAVSEYLERIKSQFTGSSKTYATQLIKQLVTERYNGGGVRD 180
LAVVKNTIEPTILGSIPECDAVSEYLERIKSQFTGSSKTYATQLIKQLVTERYNGGGVRD
Sbjct: 121 LAVVKNTIEPTILGSIPECDAVSEYLERIKSQFTGSSKTYATQLIKQLVTERYNGGGVRD 180
Query: 181 HILRMSNMASKLKPMDLGITDDFLVHLVMASLPKQFDNFIVNYNISPEKWNFEKLIANCV 240
HILRMSNMASKLKPMDLGITDDFLVHLVMASLPKQFDNFIVNYNISPEKWNFEKLIANCV
Sbjct: 181 HILRMSNMASKLKPMDLGITDDFLVHLVMASLPKQFDNFIVNYNISPEKWNFEKLIANCV 240
Query: 241 QEEERIKESNGGSINYVKDKKKNHKSPTSKGKQSQHLPQQQQFAVEKDQCLHCKKTGHYK 300
QEEERIKESNGGSINYVKDKKKNHKSPTSKGKQSQHLPQQQQFAVEKDQCLHCKKTGHYK
Sbjct: 241 QEEERIKESNGGSINYVKDKKKNHKSPTSKGKQSQHLPQQQQFAVEKDQCLHCKKTGHYK 300
Query: 301 KDCPDFLKMIMAKKDSPQGLRQD 323
KDCPDFLKMIMAKKDSPQGLRQD
Sbjct: 301 KDCPDFLKMIMAKKDSPQGLRQD 323
>Os05g0240500
Length = 257
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/232 (39%), Positives = 138/232 (59%), Gaps = 17/232 (7%)
Query: 30 QGGYS--LMGCIKDIPTLKGDNYAEWKRKLDLAFILGEVDWVLTTPCPIEPADLVRGENE 87
Q Y+ + G + +I L G NYA WK KL++ L ++D+ L IEP R ENE
Sbjct: 7 QASYASQIAGIMGNIEQLNGSNYASWKEKLEITLALLDIDYALHNNPLIEP----RPENE 62
Query: 88 SDADWQKRQRDNAPLVMSYDIEQKKWSLANKKCLAVVKNTIEPTILGSIPECDAVSEYLE 147
+ +K YD + KW ++N+K L ++K++I I G++PE EYL
Sbjct: 63 NYETLKKE----------YDEVKAKWDISNRKFLMIIKSSIIDAIRGAVPETQTAREYLA 112
Query: 148 RIKSQFTGSSKTYATQLIKQLVTERYN-GGGVRDHILRMSNMASKLKPMDLGITDDFLVH 206
+++ QF GSSK YAT LIK+LV E+Y+ G +R+H+++ ++A KLK M++ I++ LVH
Sbjct: 113 KVEEQFKGSSKVYATTLIKRLVNEKYDFTGNLREHVMKKCHVAFKLKSMEMKISEGLLVH 172
Query: 207 LVMASLPKQFDNFIVNYNISPEKWNFEKLIANCVQEEERIKESNGGSINYVK 258
+M+SLP++F F ++YN KW ++LIA CVQEEER+K N K
Sbjct: 173 FIMSSLPQEFSPFTIDYNAMKIKWGIDELIAMCVQEEERLKAERVDHANLFK 224
>Os06g0498200
Length = 239
Score = 134 bits (337), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 117/213 (54%), Gaps = 9/213 (4%)
Query: 36 MGCIKDIPTLKGDNYAEWKRKLDLAFILGEVDWVLTTPCPIEPADLVRGENESDADWQKR 95
+G +K I L G NY EW+ + + + + D I + + +
Sbjct: 7 LGQLKAIQLLDGSNYVEWRNNVLINLAMLDYD------LAIREDPPEEPQPAEELNIIGE 60
Query: 96 QRDNAPLVMSYDIEQKKWSLANKKCLAVVKNTIEPTILGSIPECDAVSEYLERIKSQFTG 155
+ DN L+ +Y+ + W +N+ CL VK I P ++G I + + + YL I+ F
Sbjct: 61 EYDN--LIWAYNKKLANWEKSNRMCLTYVKGAISPEVIGGIIDSNDIKTYLANIEESFEF 118
Query: 156 SSKTYATQLIKQLVTERYNG-GGVRDHILRMSNMASKLKPMDLGITDDFLVHLVMASLPK 214
+ +TYA L+ +++T Y+G G+R HIL M++MA++L+ MD+ I+D FLVH++M SL
Sbjct: 119 APETYANTLVNEMITSHYDGKSGIRKHILEMTHMANQLRSMDMKISDGFLVHIIMRSLGP 178
Query: 215 QFDNFIVNYNISPEKWNFEKLIANCVQEEERIK 247
+D F + YN E+W ++LI + V+EEER K
Sbjct: 179 NYDPFKIKYNTQKEEWTIQELILHSVEEEERQK 211
>Os01g0807300
Length = 295
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 149/296 (50%), Gaps = 25/296 (8%)
Query: 34 SLMGCIKDIPTLKGDNYAEWKRKLDLAFILGEVDWVLTTPCPIEPADLVRGENESDADWQ 93
S +G +K I L G NY EW+ + + + + D I + + +
Sbjct: 3 SYVGQLKAIQLLDGSNYVEWRNNVLINLAMLDYD------LAIREDPPEEPQPAEELNII 56
Query: 94 KRQRDNAPLVMSYDIEQKKWSLANKKCLAVVKNTIEPTILGSIPECDAVSEYLERIKSQF 153
+ DN L+ +Y+ + KW +N+ CL VK I P ++ I + + + YL I+ F
Sbjct: 57 GEEYDN--LMWAYNKKLAKWEKSNRMCLIYVKGAISPEVIEGIIDSNDIKTYLANIEESF 114
Query: 154 TGSSKTYATQLIKQLVTERYNG-GGVRDHILRMSNMASKLKPMDLGITDDFLVHLVMASL 212
+ +T+A L+ +++T Y+G G+R HIL M++MA++L+ MD+ I+D FLVH +M SL
Sbjct: 115 EFAHETHANTLVNEMITSHYDGKSGIRKHILEMTHMANQLRSMDMKISDGFLVH-IMRSL 173
Query: 213 PKQFDNFIVNYNISPEKWNFEKLIANCVQEEER-------IKESNGGSINYVKDKK---- 261
+D F + YN E+W ++LI + V+EEER IK+ + + K KK
Sbjct: 174 GPNYDPFKIKYNTQKEEWTIQELILHSVEEEERQKAEKQKIKDRLNLTNAFDKGKKIYQG 233
Query: 262 -KNHKSPTSKGKQSQHLPQQQQFAV---EKDQCLHCKKTGHYKKDCPDFLKMIMAK 313
++K+ +G+Q Q + AV C C GH++++C F ++ K
Sbjct: 234 ESSNKNSEPEGEQKQEGIKASTSAVPLSTSPYCHFCGSDGHWQRNCTRFTAWLVKK 289
>Os08g0339300
Length = 244
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 123/236 (52%), Gaps = 18/236 (7%)
Query: 105 SYDIEQKKWSLANKKCLAVVKNTIEPTILGSIPECDAVSEYLERIKSQFTGSSKTYATQL 164
+Y+ + W +N+ CL VK I P ++G I + + + YL I+ F + T+A L
Sbjct: 3 AYNKKLANWEKSNRMCLIYVKGAISPEVIGGIIDYNDIKMYLANIEESFEFAPDTHANML 62
Query: 165 IKQLVTERYNG-GGVRDHILRMSNMASKLKPMDLGITDDFLVHLVMASLPKQFDNFIVNY 223
+ +++T YNG G+R HIL M++MA++L+ MD+ I+D FLVH++M SL +D F Y
Sbjct: 63 VNEMITSHYNGKSGIRKHILEMTHMANQLRSMDMKISDGFLVHIIMRSLGPNYDPFKTKY 122
Query: 224 NISPEKWNFEKLIANCVQEEERIKESNGG-----SINYVKDKKKNHKSPTSKGKQSQHLP 278
N E+W ++LI + V+EEER K ++ DK K S K S+
Sbjct: 123 NTQKEEWTIQELILHSVEEEERQKAEKQKIKDRLNLTNAFDKGKKVYQGESSNKNSEPEG 182
Query: 279 QQQQFAVEKDQ----------CLHCKKTGHYKKDCPDFLKMIMAKKDS--PQGLRQ 322
+Q+Q ++ C C GH++++C F ++ K +S P G ++
Sbjct: 183 EQKQEGIKASTSAVPLSTSPYCHFCASDGHWQRNCTRFTAWLVKKGNSHRPNGSKE 238
>Os07g0417700 RNA-directed DNA polymerase (Reverse transcriptase) domain containing
protein
Length = 1011
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 122/212 (57%), Gaps = 15/212 (7%)
Query: 35 LMGCIKDIPTLKGDNYAEWKRKLDLAFILGEVDWVLTTPCPIEPADLVRGENESDADWQK 94
L I+ I G NYA+WK + L + + D+ + P EP + + D+++
Sbjct: 814 LQTTIQLIEPFDGSNYAKWKADVLLNLGILDYDYAIREDRPEEPFSV-------EHDYEE 866
Query: 95 RQRDNAPLVMSYDIEQKKWSLANKKCLAVVKNTIEPTILGSIPECDAVSEYLERIKSQFT 154
+ + Y + +W +N+ L +K+ I I+G I + D V YLE I F
Sbjct: 867 KLK-------LYREKTNEWEKSNRISLMYIKSAISTVIIGGIEDSDDVKTYLENIDRNFR 919
Query: 155 GSSKTYATQLIKQLVTERYN-GGGVRDHILRMSNMASKLKPMDLGITDDFLVHLVMASLP 213
SSK+YA+ +IK+L + RYN GVR HI++M M +LK MD+GI DD LVH +++SLP
Sbjct: 920 SSSKSYASSIIKRLTSMRYNYKDGVRKHIMQMGAMNGELKSMDMGINDDLLVHFILSSLP 979
Query: 214 KQFDNFIVNYNISPEKWNFEKLIANCVQEEER 245
F++FI+NYN +KW+ E+LI++ V+EE+R
Sbjct: 980 SDFESFIINYNNQRDKWSIEELISHSVEEEDR 1011
>Os11g0493500
Length = 479
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 115/213 (53%), Gaps = 9/213 (4%)
Query: 36 MGCIKDIPTLKGDNYAEWKRKLDLAFILGEVDWVLTTPCPIEPADLVRGENESDADWQKR 95
+G +K I L G NY EW+ + + + + D I + + +
Sbjct: 222 LGQLKAIQLLDGSNYIEWRNNVLINLAMLDYDLA------IREDPPEEPQPAEELNIIGE 275
Query: 96 QRDNAPLVMSYDIEQKKWSLANKKCLAVVKNTIEPTILGSIPECDAVSEYLERIKSQFTG 155
+ DN L+ +Y+ + W +N+ CL VK I ++G I + + + YL I+ F
Sbjct: 276 EYDN--LMWAYNKKLANWEKSNRMCLIYVKGAISLEVIGEIIDSNDIKTYLANIEESFEF 333
Query: 156 SSKTYATQLIKQLVTERYNG-GGVRDHILRMSNMASKLKPMDLGITDDFLVHLVMASLPK 214
+ +T+A L+ +++T Y+G G+R HIL M++MA++L+ MD+ I+D FL H++M SL
Sbjct: 334 APETHANTLVNEMITSHYDGKSGIRKHILEMTHMANQLRSMDMKISDGFLEHIIMRSLGP 393
Query: 215 QFDNFIVNYNISPEKWNFEKLIANCVQEEERIK 247
+D F + YN E+W ++LI + V+EEER K
Sbjct: 394 NYDPFKIKYNTQKEEWTIQELILHSVEEEERQK 426
>Os03g0375550
Length = 130
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 86/125 (68%), Gaps = 1/125 (0%)
Query: 124 VKNTIEPTILGSIPECDAVSEYLERIKSQFTGSSKTYATQLIKQLVTERYN-GGGVRDHI 182
+K+ I I+G I + D V YLE I F SSK+YA+ +IK+L + RYN GVR HI
Sbjct: 3 IKSAISNVIIGGIEDSDDVKTYLENIDRNFRSSSKSYASSIIKRLTSMRYNYKDGVRKHI 62
Query: 183 LRMSNMASKLKPMDLGITDDFLVHLVMASLPKQFDNFIVNYNISPEKWNFEKLIANCVQE 242
++M M +LK MD+GI DD LVH +++SLP F++FI+NYN +KW+ E+LI++ V+E
Sbjct: 63 MQMGAMNGELKSMDMGINDDLLVHFILSSLPSDFESFIINYNNQRDKWSIEELISHSVEE 122
Query: 243 EERIK 247
E+R K
Sbjct: 123 EDRQK 127
>Os04g0269000
Length = 186
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 77/125 (61%), Gaps = 14/125 (11%)
Query: 124 VKNTIEPTILGSIPECDAVSEYLERIKSQFTGSSKTYATQLIKQLVTERYN-GGGVRDHI 182
+K+ I I+G I + D V YLE I F SS +YA+ +IK+L + RYN GGVR HI
Sbjct: 3 IKSAISNVIIGGIEDSDDVKTYLENIDRNFRSSSMSYASSIIKRLTSTRYNYKGGVRKHI 62
Query: 183 LRMSNMASKLKPMDLGITDDFLVHLVMASLPKQFDNFIVNYNISPEKWNFEKLIANCVQE 242
++M M +LK MD+GI DD F++FI+NYN +KW+ E+LI++ ++E
Sbjct: 63 MQMGAMNGELKSMDMGINDD-------------FESFIINYNNHRDKWSIEELISHSIEE 109
Query: 243 EERIK 247
E+R K
Sbjct: 110 EDRQK 114
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,790,816
Number of extensions: 504848
Number of successful extensions: 2141
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 2131
Number of HSP's successfully gapped: 10
Length of query: 323
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 222
Effective length of database: 11,762,187
Effective search space: 2611205514
Effective search space used: 2611205514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)