Os04g0629600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transposase of Tn10 [Oryza sativa (japonica cultivar-group)].
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Os04g0629600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transposase of Tn10 [Oryza sativa (japonica cultivar-group)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.41 | 0.487 | 6.08 | 0.241 | 1.16 | 0.825 | 0.754 | -2.7 | 0.413 | 6.91 | 29.69 | 264 | -- | -- |
| 108.42 | 0.485 | 6.09 | 0.0808 | 1.17 | 0.518 | 0.642 | -- | 0.426 | 6.91 | 29.1 | 232 | -- | -- |
| 108.24 | 0.485 | 6.08 | 0.198 | 1.14 | 0.768 | -- | -1.89 | 0.432 | 7.02 | 29.6 | 247 | -- | -- |
| 108.9 | 0.486 | 6.12 | -0.0036 | 1.14 | 0.577 | -- | -- | 0.377 | 7.08 | 29.4 | 236 | -- | -- |
| 146.45 | 0.564 | 6.08 | 0.344 | -- | 1.38 | -- | -1.37 | 0.592 | -- | 28.45 | 485 | -- | -- |
| 116.43 | 0.506 | 6.11 | -0.118 | 1.37 | -- | 0.943 | -- | 0.371 | 6.56 | -- | -- | -- | -- |
| 118.66 | 0.51 | 6.11 | -0.104 | 1.38 | -- | -- | -- | 0.369 | 6.58 | -- | -- | -- | -- |
| 147.78 | 0.566 | 6.11 | 0.188 | -- | 1.32 | -- | -- | 0.552 | -- | 28.48 | 476 | -- | -- |
| 108.74 | 0.486 | 6.1 | -- | 1.14 | 0.584 | -- | -- | 0.399 | 7.06 | 29.3 | 232 | -- | -- |
| 217.29 | 0.689 | 6.14 | -0.0708 | -- | -- | -- | -- | 0.397 | -- | -- | -- | -- | -- |
| 118.95 | 0.51 | 6.11 | -- | 1.37 | -- | -- | -- | 0.38 | 6.58 | -- | -- | -- | -- |
| 148.2 | 0.567 | 6.11 | -- | -- | 1.27 | -- | -- | 0.522 | -- | 28.5 | 478 | -- | -- |
| 217.42 | 0.688 | 6.13 | -- | -- | -- | -- | -- | 0.405 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 103.91 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 12 |
| 2 | 103.95 | temperature | 30 | 30 | < th | dose dependent | sin | 19 | NA |
| 5 | 104.04 | temperature | 30 | 90 | < th | dose dependent | rect. | 18 | 1 |
| 10 | 104.61 | humidity | 70 | 30 | > th | dose dependent | rect. | 10 | 10 |
| 12 | 104.68 | temperature | 10 | 10 | > th | dose dependent | sin | 17 | NA |
| 17 | 104.83 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 16 |
| 19 | 104.93 | radiation | 1 | 270 | < th | dose independent | rect. | 8 | 11 |
| 24 | 105.12 | radiation | 1 | 270 | < th | dose dependent | rect. | 8 | 11 |
| 29 | 105.29 | humidity | 70 | 90 | > th | dose dependent | rect. | 18 | 1 |
| 37 | 105.39 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 15 |
| 45 | 105.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 2 |
| 52 | 105.68 | humidity | 70 | 10 | > th | dose dependent | rect. | 18 | 2 |
| 59 | 105.78 | wind | 7 | 720 | > th | dose dependent | rect. | 20 | 14 |
| 87 | 106.14 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 15 | 17 |
| 91 | 106.22 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 11 |
| 92 | 106.23 | humidity | 90 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 93 | 106.23 | radiation | 1 | 30 | < th | dose dependent | sin | 19 | NA |
| 94 | 106.24 | humidity | 70 | 90 | > th | dose independent | rect. | 18 | 1 |
| 98 | 106.29 | wind | 7 | 4320 | > th | dose dependent | rect. | 15 | 9 |
| 109 | 106.34 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 17 |
| 111 | 106.35 | humidity | 70 | 90 | > th | dose independent | rect. | 10 | 14 |
| 117 | 106.39 | wind | 9 | 4320 | > th | dose independent | rect. | 15 | 14 |
| 119 | 106.39 | wind | 7 | 4320 | > th | dose dependent | rect. | 15 | 14 |
| 122 | 106.40 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 8 |
| 130 | 106.43 | temperature | 25 | 30 | > th | dose dependent | sin | 18 | NA |
| 132 | 106.43 | temperature | 25 | 30 | > th | dose dependent | rect. | 12 | 6 |
| 136 | 106.43 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 20 | 22 |
| 145 | 106.50 | wind | 7 | 4320 | > th | dose independent | rect. | 16 | 7 |
| 147 | 106.51 | wind | 9 | 4320 | > th | dose independent | rect. | 15 | 9 |
| 152 | 106.52 | wind | 9 | 4320 | < th | dose independent | rect. | 15 | 14 |
| 154 | 106.52 | temperature | 15 | 10 | > th | dose dependent | rect. | 14 | 14 |
| 156 | 106.53 | wind | 7 | 4320 | < th | dose independent | rect. | 16 | 7 |
| 162 | 106.53 | temperature | 30 | 30 | < th | dose dependent | rect. | 6 | 19 |
| 176 | 106.56 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 184 | 106.58 | wind | 9 | 4320 | < th | dose independent | rect. | 15 | 10 |
| 194 | 106.59 | temperature | 25 | 30 | > th | dose dependent | rect. | 12 | 9 |
| 217 | 106.65 | wind | 9 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 220 | 106.65 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 225 | 106.66 | temperature | 30 | 90 | < th | dose independent | rect. | 17 | 23 |
| 227 | 106.66 | temperature | 30 | 30 | < th | dose dependent | rect. | 6 | 14 |
| 238 | 106.69 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 14 |
| 239 | 106.69 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 22 |
| 247 | 106.71 | temperature | 25 | 270 | > th | dose dependent | rect. | 24 | 17 |
| 251 | 106.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 6 |
| 252 | 106.73 | temperature | 25 | 30 | > th | dose dependent | rect. | 12 | 11 |
| 269 | 106.76 | temperature | 25 | 270 | > th | dose dependent | sin | 23 | NA |
| 299 | 106.79 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 23 |
| 319 | 106.82 | wind | 7 | 4320 | > th | dose dependent | rect. | 15 | 3 |
| 340 | 106.85 | humidity | 90 | 30 | > th | dose independent | rect. | 11 | 10 |
| 364 | 106.89 | temperature | 30 | 90 | < th | dose independent | rect. | 18 | 1 |
| 381 | 106.91 | radiation | 1 | 270 | < th | dose independent | rect. | 15 | 4 |
| 388 | 106.92 | temperature | 20 | 30 | > th | dose dependent | rect. | 14 | 4 |
| 389 | 106.93 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 391 | 106.93 | humidity | 70 | 90 | > th | dose independent | rect. | 10 | 10 |
| 417 | 106.97 | temperature | 15 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 430 | 106.99 | wind | 9 | 4320 | > th | dose independent | rect. | 15 | 3 |
| 431 | 106.99 | temperature | 15 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 436 | 107.00 | temperature | 15 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 440 | 107.00 | temperature | 15 | 14400 | < th | dose independent | rect. | 1 | 17 |
| 466 | 107.01 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 490 | 107.02 | humidity | 60 | 10 | > th | dose dependent | rect. | 4 | 21 |
| 491 | 107.03 | temperature | 15 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 494 | 107.03 | temperature | 15 | 14400 | < th | dose independent | rect. | 22 | 11 |
| 495 | 107.03 | temperature | 15 | 14400 | < th | dose independent | rect. | 24 | 11 |
| 515 | 107.03 | radiation | 1 | 270 | < th | dose dependent | rect. | 15 | 4 |
| 518 | 107.04 | wind | 9 | 4320 | > th | dose independent | sin | 13 | NA |
| 519 | 107.04 | temperature | 15 | 14400 | < th | dose independent | sin | 10 | NA |
| 521 | 107.04 | temperature | 15 | 14400 | < th | dose independent | sin | 5 | NA |
| 522 | 107.04 | wind | 9 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 523 | 107.04 | temperature | 15 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 544 | 107.05 | temperature | 15 | 14400 | < th | dose independent | sin | 7 | NA |
| 577 | 107.06 | temperature | 15 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 578 | 107.06 | temperature | 15 | 14400 | > th | dose independent | rect. | 24 | 23 |
| 584 | 107.07 | temperature | 15 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 589 | 107.07 | temperature | 15 | 14400 | < th | dose independent | rect. | 16 | 13 |
| 597 | 107.07 | temperature | 15 | 14400 | > th | dose independent | rect. | 19 | 21 |
| 598 | 107.07 | temperature | 15 | 14400 | > th | dose independent | rect. | 15 | 22 |
| 603 | 107.07 | temperature | 15 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 607 | 107.07 | temperature | 15 | 14400 | > th | dose independent | rect. | 22 | 23 |
| 613 | 107.08 | temperature | 15 | 14400 | > th | dose independent | no | NA | NA |
| 615 | 107.08 | temperature | 15 | 14400 | < th | dose independent | rect. | 24 | 4 |
| 617 | 107.08 | temperature | 15 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 620 | 107.08 | temperature | 15 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 637 | 107.08 | temperature | 15 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 648 | 107.09 | temperature | 15 | 14400 | > th | dose independent | sin | 14 | NA |
| 649 | 107.09 | radiation | 1 | 90 | < th | dose independent | sin | 20 | NA |
| 664 | 107.09 | temperature | 15 | 14400 | > th | dose independent | rect. | 18 | 19 |
| 733 | 107.11 | temperature | 15 | 14400 | > th | dose independent | rect. | 24 | 20 |
| 762 | 107.12 | temperature | 15 | 14400 | > th | dose independent | rect. | 22 | 19 |
| 764 | 107.12 | temperature | 15 | 14400 | > th | dose independent | rect. | 10 | 20 |
| 777 | 107.12 | humidity | 80 | 14400 | > th | dose dependent | rect. | 2 | 5 |
| 781 | 107.13 | temperature | 15 | 14400 | > th | dose independent | sin | 2 | NA |
| 812 | 107.13 | temperature | 15 | 14400 | < th | dose independent | rect. | 20 | 21 |
| 838 | 107.14 | temperature | 15 | 14400 | > th | dose independent | rect. | 11 | 18 |
| 861 | 107.14 | temperature | 15 | 14400 | < th | dose independent | rect. | 7 | 23 |
| 893 | 107.15 | radiation | 1 | 270 | < th | dose dependent | rect. | 13 | 6 |
| 898 | 107.16 | temperature | 15 | 14400 | < th | dose independent | no | NA | NA |
| 900 | 107.16 | temperature | 15 | 14400 | < th | dose independent | rect. | 4 | 7 |
| 927 | 107.17 | temperature | 15 | 14400 | > th | dose independent | rect. | 22 | 6 |
| 945 | 107.18 | temperature | 15 | 14400 | > th | dose independent | rect. | 5 | 10 |
| 972 | 107.19 | temperature | 15 | 14400 | > th | dose independent | rect. | 7 | 3 |