BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0629400 Os04g0629400|AK109572
         (207 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0629400  Conserved hypothetical protein                      223   7e-59

>Os04g0629400 Conserved hypothetical protein
          Length = 207

 Score =  223 bits (568), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 121/207 (58%), Positives = 121/207 (58%)

Query: 1   KPRXXXXXXXXXXXXXXRRVGVGAGXXXXXXXXXXXXXXXXRALCCECGCGVASHALCEL 60
           KPR              RRVGVGAG                RALCCECGCGVASHALCEL
Sbjct: 1   KPRTSAKPTASTTAKNARRVGVGAGSLSPLLSLSSLILFPSRALCCECGCGVASHALCEL 60

Query: 61  WVRERWPDELAGXXXXXXXXXLSFAMCCYVGKATKIFXXXXXXXXXXXXXXXXXXXHRTW 120
           WVRERWPDELAG         LSFAMCCYVGKATKIF                   HRTW
Sbjct: 61  WVRERWPDELAGEEEEEEDDELSFAMCCYVGKATKIFLCLAAALIVVGLVLGFGLAHRTW 120

Query: 121 GERKVQPDCRWPDCQLQPAYXXXXXXXDPLPATSGAGDTPPGVPLTEXXXXXXXXXXXXX 180
           GERKVQPDCRWPDCQLQPAY       DPLPATSGAGDTPPGVPLTE             
Sbjct: 121 GERKVQPDCRWPDCQLQPAYGGGGGGGDPLPATSGAGDTPPGVPLTEPAVAAFPGVASAS 180

Query: 181 XXXXXXXXMPYLGPPSPFAVGLAPAHG 207
                   MPYLGPPSPFAVGLAPAHG
Sbjct: 181 SAAPPTASMPYLGPPSPFAVGLAPAHG 207



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.142    0.511 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,374,385
Number of extensions: 165569
Number of successful extensions: 265
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 111
Effective length of database: 12,023,257
Effective search space: 1334581527
Effective search space used: 1334581527
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)