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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0629400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.02 (0.0483) R2 : 0.0102
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.22 (0.102) R2dN8 : 0.0132 R2N8 : 0.0102
σ : 0.909
deviance : 379.66
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
356.55 0.887 2.7 2.5 0.233 -1.58 0.0476 17.1 -0.144 11.3 31 4152 -- --
370.35 0.903 3.04 -0.0657 0.188 0.676 1.11 -- -0.309 5.72 16.2 47520 -- --
356.55 0.879 2.7 2.51 0.232 -1.58 -- 17.1 -0.145 11.4 31 4152 -- --
373 0.905 3.03 -0.0328 0.189 0.53 -- -- -0.297 7.1 17.9 47520 -- --
359.91 0.884 2.7 2.53 -- -1.63 -- 17.2 -0.154 -- 31 4150 -- --
376.55 0.91 3.01 0.0701 0.216 -- 0.238 -- -0.213 9.73 -- -- -- --
376.64 0.909 3.01 0.0811 0.216 -- -- -- -0.211 10.6 -- -- -- --
374.84 0.906 3.04 -0.0201 -- 0.485 -- -- -0.287 -- 17.9 47520 -- --
373.03 0.904 3.03 -- 0.187 0.516 -- -- -0.292 7.2 17.9 47520 -- --
379.51 0.91 3.02 0.0771 -- -- -- -- -0.212 -- -- -- -- --
376.81 0.908 3.02 -- 0.215 -- -- -- -0.22 10.6 -- -- -- --
374.85 0.905 3.04 -- -- 0.48 -- -- -0.284 -- 17.9 47520 -- --
379.66 0.909 3.02 -- -- -- -- -- -0.22 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 342.86 atmosphere 1000 90 < th dose independent rect. 1 2
2 342.99 atmosphere 1000 90 < th dose dependent rect. 1 2
3 343.08 atmosphere 1000 10 < th dose independent rect. 1 3
17 344.75 atmosphere 1000 10 < th dose dependent rect. 1 3
21 345.87 atmosphere 1000 90 < th dose independent rect. 20 8
22 346.19 atmosphere 1000 270 < th dose independent rect. 18 10
27 346.52 atmosphere 1000 270 < th dose independent sin 11 NA
33 346.79 atmosphere 1000 270 < th dose independent rect. 18 13
37 346.92 atmosphere 1000 90 < th dose independent rect. 20 13
50 347.66 atmosphere 1000 270 > th dose independent rect. 18 11
56 347.83 atmosphere 1005 270 < th dose independent rect. 24 7
60 347.96 wind 1 30 < th dose independent rect. 17 1
71 347.96 wind 1 30 < th dose dependent rect. 17 1
116 348.44 atmosphere 1000 10 < th dose independent rect. 21 8
121 348.50 atmosphere 1000 720 < th dose independent rect. 20 3
129 348.69 wind 1 270 < th dose independent rect. 15 2
134 348.71 atmosphere 1000 10 < th dose independent rect. 21 13
138 348.76 atmosphere 1000 90 < th dose independent rect. 20 18
165 349.29 wind 1 270 < th dose dependent rect. 15 2
177 349.55 humidity 70 90 < th dose independent rect. 17 1
182 349.68 temperature 25 4320 > th dose dependent rect. 2 1
206 349.99 atmosphere 1000 10 < th dose dependent rect. 21 13
228 350.39 humidity 70 90 < th dose dependent rect. 17 1
232 350.47 atmosphere 1000 90 > th dose independent sin 10 NA
244 350.57 atmosphere 1000 10 > th dose independent sin 7 NA
277 350.89 atmosphere 1000 10 < th dose independent rect. 1 1
284 350.89 atmosphere 1000 10 < th dose dependent rect. 1 1
300 351.01 atmosphere 1010 270 < th dose dependent rect. 21 11
320 351.11 atmosphere 1005 270 < th dose dependent rect. 18 14
321 351.12 atmosphere 1010 720 < th dose dependent rect. 20 6
365 351.45 atmosphere 1000 10 < th dose independent rect. 18 16
404 351.65 atmosphere 1010 720 < th dose dependent rect. 16 12
413 351.72 atmosphere 1010 270 < th dose dependent sin 10 NA
467 352.24 atmosphere 1000 10 < th dose independent rect. 18 11
479 352.30 atmosphere 1010 10 < th dose dependent sin 8 NA
506 352.47 atmosphere 1000 10 < th dose dependent rect. 21 17
527 352.64 atmosphere 1010 10 < th dose dependent rect. 20 14
538 352.70 atmosphere 1010 720 < th dose dependent sin 14 NA
542 352.73 radiation 1 90 < th dose independent rect. 8 1
546 352.73 radiation 1 90 < th dose dependent rect. 8 1
556 352.76 atmosphere 995 720 > th dose dependent rect. 18 10
610 352.97 atmosphere 1005 270 < th dose independent rect. 14 18
619 353.00 atmosphere 1000 1440 < th dose dependent rect. 1 1
656 353.14 atmosphere 1005 270 < th dose dependent rect. 23 8
663 353.17 temperature 25 4320 > th dose independent rect. 2 2
694 353.29 atmosphere 1000 1440 < th dose dependent rect. 21 1
721 353.38 atmosphere 1000 10 < th dose dependent sin 7 NA
787 353.57 atmosphere 1010 720 < th dose dependent rect. 21 2
835 353.77 atmosphere 1000 720 > th dose independent rect. 17 8
837 353.78 atmosphere 1010 10 < th dose dependent rect. 24 10
841 353.80 atmosphere 1005 720 > th dose independent rect. 14 15
849 353.83 atmosphere 1000 90 < th dose independent rect. 23 15
910 354.08 atmosphere 995 270 > th dose dependent sin 10 NA
917 354.11 atmosphere 1000 1440 > th dose independent rect. 20 6