BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0626400 Os04g0626400|AK059851
         (342 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0626400  Calycin-like family protein                         654   0.0  

>Os04g0626400 Calycin-like family protein
          Length = 342

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/326 (96%), Positives = 314/326 (96%)

Query: 17  PHPACSSRRKCRPAGRNNFRCSLHDKVPLNAHGVLSTKLLSCLAASLVFISPPCQAIPAE 76
           PHPACSSRRKCRPAGRNNFRCSLHDKVPLNAHGVLSTKLLSCLAASLVFISPPCQAIPAE
Sbjct: 17  PHPACSSRRKCRPAGRNNFRCSLHDKVPLNAHGVLSTKLLSCLAASLVFISPPCQAIPAE 76

Query: 77  TFVQPKLCQXXXXXXXXXXXXPLKFDSPSDDGGTGLMMKGMTAKNFDPIRYSGRWFEVAS 136
           TFVQPKLCQ            PLKFDSPSDDGGTGLMMKGMTAKNFDPIRYSGRWFEVAS
Sbjct: 77  TFVQPKLCQVAVVAAIDKAAVPLKFDSPSDDGGTGLMMKGMTAKNFDPIRYSGRWFEVAS 136

Query: 137 LKRGFAGQGQEDCHCTQGVYSFDEKSRSIQVDTFCVHGGPDGYITGIRGRVQCLSEEDMA 196
           LKRGFAGQGQEDCHCTQGVYSFDEKSRSIQVDTFCVHGGPDGYITGIRGRVQCLSEEDMA
Sbjct: 137 LKRGFAGQGQEDCHCTQGVYSFDEKSRSIQVDTFCVHGGPDGYITGIRGRVQCLSEEDMA 196

Query: 197 SAETDLERQEMIKGKCFLRFPTLPFIPKEPYDVLATDYDNYAVVSGAKDTSFIQIYSRTP 256
           SAETDLERQEMIKGKCFLRFPTLPFIPKEPYDVLATDYDNYAVVSGAKDTSFIQIYSRTP
Sbjct: 197 SAETDLERQEMIKGKCFLRFPTLPFIPKEPYDVLATDYDNYAVVSGAKDTSFIQIYSRTP 256

Query: 257 NPGPEFIEKYKSYAANFGYDPSKIKDTPQDCEVMSTDQLGLMMSMPGMTEALTNQFPDLK 316
           NPGPEFIEKYKSYAANFGYDPSKIKDTPQDCEVMSTDQLGLMMSMPGMTEALTNQFPDLK
Sbjct: 257 NPGPEFIEKYKSYAANFGYDPSKIKDTPQDCEVMSTDQLGLMMSMPGMTEALTNQFPDLK 316

Query: 317 LSAPVAFNPFTSVFDTLKNLVDLYFK 342
           LSAPVAFNPFTSVFDTLKNLVDLYFK
Sbjct: 317 LSAPVAFNPFTSVFDTLKNLVDLYFK 342



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,918,033
Number of extensions: 500782
Number of successful extensions: 893
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 893
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 240
Effective length of database: 11,709,973
Effective search space: 2810393520
Effective search space used: 2810393520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)