Os04g0626400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Calycin-like family protein.
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Os04g0626400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Calycin-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 82.9 | 0.428 | 12.6 | -1.42 | 1.09 | 0.787 | 0.132 | 0.598 | -0.691 | 20.7 | 25.11 | 1416 | -- | -- |
| 83.05 | 0.424 | 12.6 | -1.58 | 1.08 | 0.84 | 0.15 | -- | -0.727 | 20.9 | 25.31 | 1456 | -- | -- |
| 82.94 | 0.424 | 12.6 | -1.43 | 1.09 | 0.785 | -- | 0.599 | -0.684 | 20.7 | 25.27 | 1410 | -- | -- |
| 83.1 | 0.425 | 12.6 | -1.59 | 1.08 | 0.844 | -- | -- | -0.729 | 20.7 | 25.2 | 1415 | -- | -- |
| 112.71 | 0.494 | 12.7 | -2.07 | -- | 1.75 | -- | -2.1 | -0.947 | -- | 23.99 | 785 | -- | -- |
| 113.33 | 0.499 | 12.6 | -1.29 | 1.1 | -- | 0.214 | -- | -0.631 | 21.1 | -- | -- | -- | -- |
| 113.48 | 0.499 | 12.6 | -1.3 | 1.1 | -- | -- | -- | -0.631 | 21 | -- | -- | -- | -- |
| 114.21 | 0.498 | 12.6 | -1.66 | -- | 1.56 | -- | -- | -0.809 | -- | 24.14 | 793 | -- | -- |
| 144.67 | 0.56 | 12.6 | -- | 1.09 | 0.525 | -- | -- | -0.443 | 20.8 | 27.8 | 1484 | -- | -- |
| 183.01 | 0.632 | 12.6 | -1.29 | -- | -- | -- | -- | -0.638 | -- | -- | -- | -- | -- |
| 157.68 | 0.587 | 12.6 | -- | 1.1 | -- | -- | -- | -0.487 | 21 | -- | -- | -- | -- |
| 182.82 | 0.63 | 12.6 | -- | -- | 1.22 | -- | -- | -0.572 | -- | 24.6 | 764 | -- | -- |
| 227.12 | 0.703 | 12.5 | -- | -- | -- | -- | -- | -0.494 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.22 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 11 |
| 5 | 79.31 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 14 |
| 11 | 79.54 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 13 |
| 41 | 80.03 | humidity | 60 | 1440 | > th | dose dependent | sin | 19 | NA |
| 42 | 80.05 | humidity | 80 | 1440 | > th | dose independent | sin | 22 | NA |
| 94 | 80.56 | humidity | 80 | 1440 | < th | dose independent | sin | 23 | NA |
| 126 | 80.80 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 12 |
| 145 | 80.89 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 204 | 81.25 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 217 | 81.30 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 237 | 81.41 | humidity | 90 | 1440 | < th | dose dependent | sin | 18 | NA |
| 285 | 81.63 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 9 |
| 349 | 81.86 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 7 |
| 382 | 81.99 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 9 |
| 395 | 82.04 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 6 |
| 398 | 82.04 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 12 |
| 403 | 82.05 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 434 | 82.14 | radiation | 1 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 488 | 82.27 | radiation | 20 | 1440 | < th | dose dependent | sin | 15 | NA |
| 506 | 82.31 | radiation | 40 | 1440 | < th | dose dependent | rect. | 13 | 11 |
| 517 | 82.34 | radiation | 40 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 519 | 82.34 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 12 |
| 520 | 82.34 | radiation | 40 | 1440 | < th | dose dependent | rect. | 13 | 14 |
| 530 | 82.36 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 533 | 82.36 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 14 |
| 547 | 82.38 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 8 |
| 567 | 82.43 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 572 | 82.43 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 17 |
| 576 | 82.44 | temperature | 25 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 604 | 82.49 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 626 | 82.51 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 17 |
| 698 | 82.61 | temperature | 25 | 1440 | > th | dose dependent | sin | 22 | NA |
| 717 | 82.64 | radiation | 1 | 1440 | > th | dose dependent | sin | 17 | NA |
| 759 | 82.69 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 817 | 82.76 | radiation | 40 | 1440 | < th | dose dependent | sin | 16 | NA |
| 841 | 82.79 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 852 | 82.81 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 21 |
| 935 | 82.87 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 3 |