BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0621800 Os04g0621800|AK063017
         (158 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0621800  Conserved hypothetical protein                      126   7e-30
Os09g0550300  Conserved hypothetical protein                       77   5e-15

>Os04g0621800 Conserved hypothetical protein
          Length = 158

 Score =  126 bits (316), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 78/158 (49%), Positives = 78/158 (49%)

Query: 1   QQHHFLVLLSSSPSTAXXXXXXXXXXXXXXXXXXXDLGRRPPHQRQXXXXXXXXXXXXXX 60
           QQHHFLVLLSSSPSTA                   DLGRRPPHQRQ              
Sbjct: 1   QQHHFLVLLSSSPSTAHRGGSRGHRRRSRRHPSRPDLGRRPPHQRQSSSLIVAFSSSSGS 60

Query: 61  XXXXXXXQFISNEQTNRSSNQPIXXXXXXXXXXXXXXXXXXXXXXXXXXIEPAXXXXXXX 120
                  QFISNEQTNRSSNQPI                          IEPA       
Sbjct: 61  SSELVVLQFISNEQTNRSSNQPISAPVAGARPPPARPSSSIAASRCRPPIEPASRRCSSS 120

Query: 121 XXXXXXXLFLNFRSTSTPLSVFVFSVACKLMVKQQQDR 158
                  LFLNFRSTSTPLSVFVFSVACKLMVKQQQDR
Sbjct: 121 SSSHRPRLFLNFRSTSTPLSVFVFSVACKLMVKQQQDR 158



>Os09g0550300 Conserved hypothetical protein
          Length = 195

 Score = 77.0 bits (188), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 53/124 (42%), Gaps = 1/124 (0%)

Query: 36  DLGRRPPHQRQXXXXXXXXXXXXXXXXXXXXXQFISNEQTNRSSNQPIXXXXXXXXXXXX 95
           DLGRRPPHQRQ                     QFISNEQTNRSSNQPI            
Sbjct: 52  DLGRRPPHQRQSSSLIVAFSSSSGSSSEPVVLQFISNEQTNRSSNQPISAPVVGARPPPA 111

Query: 96  XXXXXXXXXXXXXXIEPAXXXXXXXXXXXXXXLFLNFRSTSTPLSVFVFSV-ACKLMVKQ 154
                         IEPA              LFLNFRSTSTPLSVFVF +  C      
Sbjct: 112 RPSSSIAASRCRPPIEPASRRCSSSSSSHRPRLFLNFRSTSTPLSVFVFLLRVCSWSSSN 171

Query: 155 QQDR 158
           + DR
Sbjct: 172 RIDR 175



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.130    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,320,208
Number of extensions: 34556
Number of successful extensions: 29
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 2
Length of query: 158
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 65
Effective length of database: 12,179,899
Effective search space: 791693435
Effective search space used: 791693435
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)