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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0621800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.53 (0.0484) R2 : 0.687
β1 : -1.14 (0.177) R2dD : 0.0297 R2D : -0.0803
β2 : 0.717 (0.119) R2dC : 0.025 R2C : -0.147
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 2.96 (0.103) R2dN8 : 0.754 R2N8 : 0.632
σ : 0.909
deviance : 376.98
__
_____
C
peak time of C : 21.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
350.75 0.88 4.6 -0.834 0.69 11.7 -1.3 39.1 2.98 21.7 10.55 258 -- --
358.44 0.882 4.5 -0.978 0.656 3.55 -1.81 -- 3.14 21.1 11.5 327 -- --
357.02 0.88 4.59 -0.798 0.699 11.8 -- 39.2 2.98 21.5 10.57 258 -- --
360.3 0.884 4.53 -1.09 0.714 2.91 -- -- 2.98 21.5 11.05 334 -- --
385.5 0.914 4.57 -0.792 -- 10 -- 30.5 2.99 -- 10.54 268 -- --
370.54 0.902 4.53 -1.19 0.71 -- -1.34 -- 2.95 21.3 -- -- -- --
376.98 0.909 4.53 -1.14 0.717 -- -- -- 2.96 21.2 -- -- -- --
387.82 0.917 4.5 -1.03 -- 3.01 -- -- 2.99 -- 10.63 289 -- --
388.09 0.918 4.49 -- 0.673 3.29 -- -- 3.11 21.6 10.49 268 -- --
406.87 0.943 4.51 -1.14 -- -- -- -- 2.95 -- -- -- -- --
411.41 0.949 4.5 -- 0.718 -- -- -- 3.08 21.1 -- -- -- --
414.71 0.948 4.47 -- -- 3.44 -- -- 3.11 -- 10.47 266 -- --
441.17 0.98 4.48 -- -- -- -- -- 3.08 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 348.29 wind 9 90 > th dose dependent rect. 13 3
2 348.48 wind 9 90 > th dose independent rect. 13 3
3 348.73 radiation 30 43200 > th dose dependent rect. 16 16
4 348.81 radiation 30 43200 > th dose dependent rect. 7 1
20 349.27 radiation 40 43200 < th dose independent rect. 16 14
21 349.33 radiation 30 43200 < th dose independent rect. 7 1
22 349.35 radiation 30 43200 < th dose independent rect. 18 14
28 349.46 radiation 30 43200 < th dose independent rect. 2 6
29 349.47 radiation 30 43200 < th dose independent rect. 24 8
37 349.61 radiation 10 43200 > th dose dependent rect. 17 13
39 349.67 radiation 10 43200 > th dose dependent rect. 17 1
53 349.85 radiation 40 43200 < th dose independent rect. 16 2
56 349.89 wind 9 10 > th dose independent rect. 15 1
67 349.89 wind 9 10 > th dose dependent rect. 15 1
85 350.00 radiation 10 43200 > th dose dependent rect. 5 1
98 350.12 radiation 20 43200 > th dose independent rect. 17 14
99 350.18 radiation 10 14400 < th dose independent rect. 18 9
100 350.21 radiation 10 14400 < th dose independent rect. 18 4
102 350.29 radiation 40 43200 < th dose independent rect. 16 8
104 350.32 radiation 10 14400 < th dose independent rect. 18 7
113 350.62 radiation 20 43200 > th dose independent rect. 6 1
159 351.08 temperature 20 4320 < th dose independent rect. 13 11
163 351.17 temperature 20 4320 < th dose independent rect. 20 3
166 351.21 radiation 1 14400 > th dose independent rect. 9 4
167 351.22 radiation 1 14400 < th dose independent rect. 9 4
171 351.30 wind 5 1440 < th dose independent rect. 13 1
174 351.41 humidity 80 4320 > th dose independent rect. 2 1
178 351.43 radiation 30 43200 > th dose dependent rect. 15 2
207 351.47 humidity 60 43200 < th dose independent rect. 16 19
212 351.51 temperature 15 14400 > th dose independent rect. 2 1
213 351.53 wind 5 1440 > th dose independent rect. 13 1
215 351.58 humidity 60 43200 > th dose independent rect. 17 18
242 351.74 radiation 40 43200 < th dose dependent rect. 18 12
245 351.76 radiation 10 43200 < th dose dependent rect. 18 12
250 351.78 temperature 20 4320 > th dose independent rect. 13 11
254 351.81 temperature 15 43200 < th dose independent rect. 21 1
260 351.85 temperature 20 4320 < th dose independent rect. 18 5
271 351.91 temperature 15 43200 > th dose independent rect. 21 1
278 351.92 radiation 40 43200 < th dose independent rect. 15 18
286 351.97 temperature 15 14400 < th dose independent rect. 2 1
287 351.97 temperature 20 4320 > th dose independent rect. 20 3
293 352.02 temperature 15 43200 < th dose independent rect. 11 1
296 352.03 radiation 30 43200 > th dose independent rect. 16 16
302 352.11 wind 5 270 > th dose dependent rect. 13 1
317 352.28 humidity 60 43200 < th dose independent sin 10 NA
318 352.29 temperature 15 43200 > th dose independent rect. 11 1
319 352.31 temperature 15 43200 < th dose independent rect. 24 1
321 352.31 temperature 15 43200 < th dose dependent rect. 23 1
325 352.42 temperature 15 14400 > th dose independent rect. 24 1
327 352.42 humidity 60 43200 < th dose dependent rect. 15 21
329 352.44 humidity 90 10 < th dose dependent rect. 4 1
331 352.47 radiation 1 14400 < th dose independent rect. 9 1
336 352.54 temperature 15 14400 > th dose independent rect. 24 3
339 352.56 radiation 40 43200 < th dose dependent rect. 17 5
340 352.56 radiation 40 43200 < th dose dependent rect. 17 7
391 352.70 wind 9 270 > th dose dependent rect. 22 18
404 352.72 radiation 1 14400 > th dose independent rect. 9 1
405 352.72 temperature 15 43200 > th dose independent rect. 21 4
412 352.74 humidity 80 4320 < th dose independent rect. 2 1
423 352.81 humidity 90 14400 < th dose independent rect. 4 2
426 352.81 humidity 70 43200 < th dose dependent rect. 9 1
428 352.82 wind 1 43200 < th dose dependent rect. 15 2
429 352.82 wind 1 1440 > th dose dependent rect. 10 5
430 352.82 wind 9 270 > th dose dependent rect. 1 15
435 352.84 wind 1 270 > th dose dependent rect. 4 12
438 352.86 temperature 15 43200 < th dose independent rect. 21 4
442 352.86 wind 9 1440 < th dose dependent rect. 10 5
445 352.87 humidity 60 43200 > th dose independent sin 10 NA
446 352.87 wind 1 43200 > th dose independent rect. 16 1
455 352.89 radiation 1 43200 < th dose dependent rect. 10 1
456 352.91 wind 1 43200 < th dose independent rect. 15 2
461 352.92 wind 9 270 > th dose dependent rect. 9 7
534 353.06 humidity 70 43200 < th dose dependent rect. 18 16
545 353.10 radiation 1 43200 < th dose dependent rect. 8 1
584 353.18 radiation 1 43200 < th dose dependent rect. 8 3
587 353.19 wind 1 1440 > th dose dependent rect. 12 2
597 353.25 wind 3 1440 > th dose independent rect. 10 4
601 353.26 wind 9 1440 < th dose dependent rect. 12 2
610 353.29 temperature 20 4320 > th dose independent rect. 21 1
620 353.31 humidity 70 43200 < th dose independent rect. 19 14
644 353.35 wind 3 1440 < th dose independent rect. 10 4
664 353.43 radiation 1 14400 > th dose independent rect. 12 1
697 353.50 temperature 20 43200 > th dose independent rect. 14 1
698 353.51 wind 9 43200 < th dose independent rect. 12 1
701 353.51 humidity 70 43200 > th dose independent rect. 19 14
710 353.53 temperature 20 43200 < th dose independent rect. 14 1
740 353.58 radiation 1 14400 < th dose independent rect. 12 1
771 353.71 temperature 20 4320 < th dose independent sin 18 NA
792 353.77 temperature 15 43200 > th dose independent rect. 10 17
794 353.78 wind 5 1440 < th dose independent rect. 12 3
795 353.78 radiation 20 43200 < th dose dependent rect. 19 10
861 353.94 radiation 1 43200 > th dose independent rect. 4 1
874 353.94 temperature 15 43200 < th dose independent rect. 10 17
896 353.97 radiation 10 43200 < th dose dependent rect. 2 3
897 353.98 temperature 20 4320 > th dose independent sin 18 NA
934 354.04 humidity 60 43200 > th dose independent rect. 9 2
938 354.04 humidity 70 43200 < th dose dependent rect. 6 5
944 354.05 wind 1 43200 < th dose dependent rect. 1 5
973 354.10 radiation 10 43200 < th dose dependent rect. 23 6
977 354.12 temperature 15 43200 > th dose independent sin 15 NA
994 354.15 humidity 60 43200 < th dose dependent rect. 9 11