BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0619500 Os04g0619500|AK066247
         (323 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0619500  Ovarian tumour, otubain domain containing protein   493   e-139

>Os04g0619500 Ovarian tumour, otubain domain containing protein
          Length = 323

 Score =  493 bits (1268), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 249/323 (77%), Positives = 249/323 (77%)

Query: 1   MDETLADXXXXXXXXXXXXXXXXXXXXXTLEEVLSRHRKEKSKLQDKETSLXXXXXXXXX 60
           MDETLAD                     TLEEVLSRHRKEKSKLQDKETSL         
Sbjct: 1   MDETLADESAAGGGEAAAAEPAQESQQETLEEVLSRHRKEKSKLQDKETSLKKAAAKGSK 60

Query: 61  XXXXXXXXQVEEEISRXXXXXXXXXXXXXXTFGYKSSGSSEKGNMDTLVKAIAGVSVTSN 120
                   QVEEEISR              TFGYKSSGSSEKGNMDTLVKAIAGVSVTSN
Sbjct: 61  AEQKAKKKQVEEEISRLSAELEAKHAAELATFGYKSSGSSEKGNMDTLVKAIAGVSVTSN 120

Query: 121 ADSAKPSKGXXXXXXXXXXXXXXXXXXXXXXNNLVSDRMIENEKLEKKLEPMGLTIQEIK 180
           ADSAKPSKG                      NNLVSDRMIENEKLEKKLEPMGLTIQEIK
Sbjct: 121 ADSAKPSKGARRREKKAKEEAAREQRIQEEQNNLVSDRMIENEKLEKKLEPMGLTIQEIK 180

Query: 181 PDGHCLYRAVENQLSLYSRETTQYNYQELRQMTANYMKEHAADFLPFFLSEGKVESGPDP 240
           PDGHCLYRAVENQLSLYSRETTQYNYQELRQMTANYMKEHAADFLPFFLSEGKVESGPDP
Sbjct: 181 PDGHCLYRAVENQLSLYSRETTQYNYQELRQMTANYMKEHAADFLPFFLSEGKVESGPDP 240

Query: 241 LESFKRYCEEVESTAAWGGQLELGALTHCLKKRIVVYSGSFPDVEMGKEYKLDSGGKDGP 300
           LESFKRYCEEVESTAAWGGQLELGALTHCLKKRIVVYSGSFPDVEMGKEYKLDSGGKDGP
Sbjct: 241 LESFKRYCEEVESTAAWGGQLELGALTHCLKKRIVVYSGSFPDVEMGKEYKLDSGGKDGP 300

Query: 301 SIRLSYHRHAYGLGEHYNSVVPA 323
           SIRLSYHRHAYGLGEHYNSVVPA
Sbjct: 301 SIRLSYHRHAYGLGEHYNSVVPA 323



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.129    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,214,455
Number of extensions: 294896
Number of successful extensions: 452
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 453
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 222
Effective length of database: 11,762,187
Effective search space: 2611205514
Effective search space used: 2611205514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 156 (64.7 bits)