BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0616800 Os04g0616800|Os04g0616800
         (312 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0616800  Conserved hypothetical protein                      608   e-174

>Os04g0616800 Conserved hypothetical protein
          Length = 312

 Score =  608 bits (1567), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 294/312 (94%), Positives = 294/312 (94%)

Query: 1   MEARLYAEFRATARARLMPAVTLAESCKKFGYHPPAPPFEIINHPDLFERAWGWDTILPF 60
           MEARLYAEFRATARARLMPAVTLAESCKKFGYHPPAPPFEIINHPDLFERAWGWDTILPF
Sbjct: 1   MEARLYAEFRATARARLMPAVTLAESCKKFGYHPPAPPFEIINHPDLFERAWGWDTILPF 60

Query: 61  SVARTFSRYKEYLVDYYNRNQKKPNXXXXXXXXXXXXXXXXXXNKCAEMEGHLMFLLKCR 120
           SVARTFSRYKEYLVDYYNRNQKKPN                  NKCAEMEGHLMFLLKCR
Sbjct: 61  SVARTFSRYKEYLVDYYNRNQKKPNAAAAADLTGDDDSLTALANKCAEMEGHLMFLLKCR 120

Query: 121 AGVFTENVEIKISRTSDRITKRARETTTNALESEFPAAAVAFKCITKEAELMCAMLIHAA 180
           AGVFTENVEIKISRTSDRITKRARETTTNALESEFPAAAVAFKCITKEAELMCAMLIHAA
Sbjct: 121 AGVFTENVEIKISRTSDRITKRARETTTNALESEFPAAAVAFKCITKEAELMCAMLIHAA 180

Query: 181 EDHPYWFVLCNKVRLYALRFMAYKEPEYILAAAAMMGITREANLTCELVKERHKDKNGRE 240
           EDHPYWFVLCNKVRLYALRFMAYKEPEYILAAAAMMGITREANLTCELVKERHKDKNGRE
Sbjct: 181 EDHPYWFVLCNKVRLYALRFMAYKEPEYILAAAAMMGITREANLTCELVKERHKDKNGRE 240

Query: 241 FFSIFIRTRTLASMYYILKEYSAVGKPTRDNTAGKLISDESDVKTCPGKDVVENDILDDW 300
           FFSIFIRTRTLASMYYILKEYSAVGKPTRDNTAGKLISDESDVKTCPGKDVVENDILDDW
Sbjct: 241 FFSIFIRTRTLASMYYILKEYSAVGKPTRDNTAGKLISDESDVKTCPGKDVVENDILDDW 300

Query: 301 IVISPKKAETIG 312
           IVISPKKAETIG
Sbjct: 301 IVISPKKAETIG 312



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,628,644
Number of extensions: 355525
Number of successful extensions: 787
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 785
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 211
Effective length of database: 11,762,187
Effective search space: 2481821457
Effective search space used: 2481821457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)