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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0616800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.03 (0.0502) R2 : 0.621
β1 : -4.59 (0.213) R2dD : 0.601 R2D : 0.449
β2 : 1.18 (0.118) R2dC : 0.084 R2C : 0.0642
β3 : 3.03 (0.328) R2dE : 0.11 R2E : 0.0716
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 9.73 (1.14) R2dD*E : 0.121 R2D*E : -0.287
γ1 : 0.275 (0.108) R2dN8 : 0.0067 R2N8 : 0.0172
σ : 0.889
deviance : 364.64
__
_____
C
peak time of C : 21.2
E
wheather : radiation
threshold : 0.7805
memory length : 2365
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 17.1
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
367.18 0.9 6.02 -4.6 1.23 2.77 0.314 8.76 0.251 21.7 0.9994 2377 17.7 --
417.16 0.951 6.02 -3.66 1.26 1.89 0.575 -- 0.346 22.1 1.796 2222 18.7 --
364.64 0.889 6.03 -4.59 1.18 3.03 -- 9.73 0.275 21.2 0.7805 2365 17.1 --
414.25 0.948 5.98 -3.78 1.25 1.75 -- -- 0.404 22.3 1.8 2265 18.5 --
415.79 0.95 6.02 -4.67 -- 3.36 -- 9.58 0.314 -- 0.8084 1769 17.2 --
438.56 0.982 5.94 -3.94 1.1 -- 0.761 -- 0.218 23 -- -- -- --
440.73 0.983 5.95 -3.97 1.1 -- -- -- 0.217 22.8 -- -- -- --
442.51 0.98 5.98 -3.95 -- 1.87 -- -- 0.439 -- 2.51 1810 14.6 --
473.66 1.01 5.75 -- 1.15 2.85 -- -- 1.15 0.792 0.36 47520 20 --
516.04 1.06 5.92 -3.95 -- -- -- -- 0.224 -- -- -- -- --
856.65 1.37 5.85 -- 1.08 -- -- -- 0.66 22.5 -- -- -- --
528.19 1.07 5.75 -- -- 2.99 -- -- 1.39 -- 0.1915 47520 21.5 --
927.65 1.42 5.82 -- -- -- -- -- 0.662 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 365.25 humidity 80 43200 > th dose dependent rect. 20 5
2 365.28 humidity 80 43200 > th dose dependent rect. 18 10
11 366.22 humidity 80 43200 > th dose dependent rect. 21 3
17 366.97 humidity 80 43200 > th dose dependent sin 13 NA
21 367.32 humidity 90 43200 < th dose independent rect. 21 8
35 368.39 humidity 90 43200 < th dose independent rect. 23 5
49 369.02 humidity 90 43200 > th dose independent rect. 1 2
55 369.41 humidity 90 43200 > th dose independent rect. 24 5
58 369.61 humidity 80 43200 > th dose dependent rect. 20 15
89 370.49 humidity 80 43200 < th dose dependent rect. 7 1
131 372.17 wind 1 14400 < th dose dependent rect. 2 4
218 375.00 humidity 80 14400 > th dose independent rect. 17 1
221 375.10 atmosphere 1000 270 > th dose independent rect. 3 7
249 375.72 humidity 80 14400 < th dose independent rect. 17 2
265 376.06 radiation 40 43200 < th dose dependent rect. 24 5
284 376.47 humidity 80 14400 < th dose independent rect. 16 6
285 376.54 humidity 80 14400 > th dose independent rect. 15 7
288 376.59 humidity 90 14400 < th dose dependent rect. 16 6
306 376.83 humidity 90 14400 < th dose dependent rect. 18 1
312 376.86 humidity 80 14400 < th dose dependent rect. 16 1
327 377.01 humidity 60 14400 > th dose dependent rect. 18 1
348 377.30 humidity 90 14400 < th dose dependent rect. 15 10
377 377.59 atmosphere 995 270 > th dose dependent rect. 3 6
382 377.64 humidity 90 43200 > th dose independent rect. 10 1
383 377.64 humidity 70 14400 > th dose independent rect. 15 16
386 377.68 humidity 60 14400 > th dose dependent rect. 16 5
397 377.75 temperature 25 14400 > th dose dependent rect. 7 1
419 377.92 radiation 20 43200 < th dose independent rect. 24 6
425 377.94 humidity 70 14400 > th dose independent rect. 15 13
456 378.12 humidity 90 43200 < th dose independent sin 11 NA
473 378.22 humidity 90 43200 < th dose independent rect. 14 15
479 378.26 humidity 90 43200 < th dose independent rect. 10 1
483 378.27 humidity 80 14400 < th dose dependent rect. 15 16
536 378.59 humidity 70 14400 < th dose independent rect. 15 16
617 378.93 radiation 40 43200 < th dose dependent rect. 3 2
653 379.07 wind 1 14400 < th dose independent rect. 2 4
655 379.08 humidity 70 14400 > th dose independent sin 14 NA
658 379.11 humidity 80 14400 < th dose independent sin 16 NA
659 379.11 temperature 20 14400 < th dose independent rect. 24 1
661 379.12 temperature 20 14400 > th dose independent rect. 24 1
714 379.41 wind 1 43200 < th dose dependent rect. 20 1
754 379.63 temperature 25 14400 > th dose independent rect. 7 1
759 379.67 humidity 80 14400 > th dose independent sin 17 NA
768 379.72 radiation 1 43200 < th dose independent rect. 9 2
778 379.73 humidity 70 43200 > th dose dependent no NA NA
788 379.79 radiation 1 43200 > th dose independent rect. 9 2
794 379.80 humidity 70 43200 > th dose dependent rect. 5 23
801 379.82 temperature 20 14400 > th dose dependent rect. 4 1
829 379.97 wind 1 43200 > th dose independent rect. 16 1
830 379.97 temperature 15 43200 > th dose independent rect. 3 2
835 379.98 humidity 90 14400 < th dose dependent sin 15 NA
871 380.15 radiation 1 43200 < th dose independent rect. 24 5
913 380.37 radiation 1 43200 < th dose dependent rect. 7 6
921 380.41 humidity 90 43200 > th dose dependent rect. 2 1
922 380.42 temperature 25 14400 < th dose independent rect. 6 3
945 380.50 temperature 15 43200 < th dose independent rect. 4 1
956 380.54 radiation 1 43200 < th dose dependent rect. 9 3
978 380.65 humidity 70 43200 > th dose dependent rect. 2 23